Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq67 93.3 1e-13 seq37 84.2 5e-11 >seq67 Length=753185 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| |||||||| || ||||| || || |||||||| Sbjct 68547 CCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCCGACGACTCAACCTCC 68606 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| |||||||||||||| ||||| || || | |||||| Sbjct 68607 AGGGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 68650 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || ||| ||| || |||||||| || || || ||||| | ||||| Sbjct 68294 AGCACCAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCATCC 68353 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 |||||||||||||| ||||| || || || || |||||||| |||| ||| Sbjct 68354 TCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCT 68404 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||||||||| |||||||| ||||| ||||| || || ||||| Sbjct 69187 CCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATTGTGTCCGAAGACTCGACCTCC 69246 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || || ||||| || |||||||| || | |||||| || Sbjct 69247 AGGGTAATAGTTTTACCCGTAAGGGTCTTTACGAAGATCTGCATGTT 69293 >seq37 Length=1295102 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||| ||||| ||||| || ||||||||||| || || |||||| Sbjct 457980 CCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGACTCCACCTCG 457921 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| |||||||| ||||| || || | ||||| Sbjct 457920 AGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATTTGCAT 457877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159133420604615