Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq67 93.3 1e-13
seq37 84.2 5e-11
>seq67
Length=753185
Score = 93.3 bits (102), Expect = 1e-13
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070
|| ||||||||||||||||| |||||||| || ||||| || || ||||||||
Sbjct 68547 CCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCCGACGACTCAACCTCC 68606
Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| |||||||||||||| ||||| || || | ||||||
Sbjct 68607 AGGGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 68650
Score = 86.0 bits (94), Expect = 1e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || || || || ||| ||| || |||||||| || || || ||||| | |||||
Sbjct 68294 AGCACCAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCATCC 68353
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013
|||||||||||||| ||||| || || || || |||||||| |||| |||
Sbjct 68354 TCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCT 68404
Score = 86.0 bits (94), Expect = 1e-11
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070
|||||||||||||||||||| |||||||| ||||| ||||| || || |||||
Sbjct 69187 CCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATTGTGTCCGAAGACTCGACCTCC 69246
Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || || || || ||||| || |||||||| || | |||||| ||
Sbjct 69247 AGGGTAATAGTTTTACCCGTAAGGGTCTTTACGAAGATCTGCATGTT 69293
>seq37
Length=1295102
Score = 84.2 bits (92), Expect = 5e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070
|| ||||||||||| ||||| ||||| || ||||||||||| || || ||||||
Sbjct 457980 CCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGACTCCACCTCG 457921
Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| ||||| |||||||| ||||| || || | |||||
Sbjct 457920 AGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATTTGCAT 457877
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159133420604615
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |