Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq29 109 1e-18 seq48 86.0 1e-11 >seq29 Length=1535765 Score = 109 bits (120), Expect = 1e-18 Identities = 89/104 (86%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| |||||||||| |||||||| | || ||| || ||||| Sbjct 182202 TGAGAGGATGATCAGCCACACTGGGACTGAATCACGGCCCA-GACTCCTACGAGAGGCAG 182260 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| ||||||| |||||||||||||||| ||||| || ||| Sbjct 182261 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCAAT 182304 >seq48 Length=1037572 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || ||| || || |||| |||||| || |||| || Sbjct 716292 CGCAGACGCAGTACCAGGTGCAGTGTGCTCTCCTTCTGGATATTGTAGTCTGCCAGCGTA 716233 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||| ||||| ||||| ||||||||||| | || || |||||||| ||||| ||| Sbjct 716232 CGCCCATCCTCTAGTTGCTTGCCAGCGAAGATCAACCGCTGCTGGTCGGGAGGAATGCCT 716173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192512085588194