Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq29 109 1e-18
seq48 86.0 1e-11
>seq29
Length=1535765
Score = 109 bits (120), Expect = 1e-18
Identities = 89/104 (86%), Gaps = 3/104 (3%)
Strand=Plus/Plus
Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825
|||||| ||||||||||||| |||||||||| |||||||| | || ||| || |||||
Sbjct 182202 TGAGAGGATGATCAGCCACACTGGGACTGAATCACGGCCCA-GACTCCTACGAGAGGCAG 182260
Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869
|||||| ||||||| |||||||||||||||| ||||| || |||
Sbjct 182261 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCAAT 182304
>seq48
Length=1037572
Score = 86.0 bits (94), Expect = 1e-11
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||| || ||||| || ||| || || |||| |||||| || |||| ||
Sbjct 716292 CGCAGACGCAGTACCAGGTGCAGTGTGCTCTCCTTCTGGATATTGTAGTCTGCCAGCGTA 716233
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| |||||| ||||| ||||| ||||||||||| | || || |||||||| ||||| |||
Sbjct 716232 CGCCCATCCTCTAGTTGCTTGCCAGCGAAGATCAACCGCTGCTGGTCGGGAGGAATGCCT 716173
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192512085588194
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |