Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 1e-12 >seq6 Length=2401260 Score = 87.8 bits (96), Expect = 1e-12 Identities = 106/140 (76%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 53534 GGCGACAAGTTTGCATCCT-TCACGGCGCAAAAGGGGACATGCGGAGCGGTCCTGACTCA 53592 ||||||||||| || ||| ||||||| || ||||| || ||||| | | | || | Sbjct 2072215 GGCGACAAGTTCGCCTCCCGTCACGGC-CAGAAGGGCACCTGCGG--CATTACCTACACC 2072271 Query 53593 --GGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCAC 53650 |||||||||||||||| | ||| || | ||||| ||| ||||| ||||||| ||| Sbjct 2072272 ATGGAGGACATGCCCTTCTCCGCGGAGGGCATTGTGCCGGACATCATCGTCAACCCGCAC 2072331 Query 53651 GCCTTTCCCTCCAGGATGAC 53670 ||| |||||||| | ||||| Sbjct 2072332 GCCATTCCCTCCCGCATGAC 2072351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406157007407386