Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_031058.1
Length=58566
Score E
Sequences producing significant alignments: (Bits) Value
seq53 91.5 6e-14
>seq53
Length=954740
Score = 91.5 bits (100), Expect = 6e-14
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 55035 CTGGAACTGTGGTTACTGTATCAACGTGAGTGGTGTGAGCACAAGCCTTCCGTCACTGTC 55094
||||| |||| || ||| ||||| | ||||| || |||||||| || |||||||
Sbjct 201878 CTGGAGTTGTGTTTGTCGTACCAACGGTACTGGTGCGAACACAAGCCCTCTATCACTGTG 201937
Query 55095 ACCGTGCGTGACGAGGAATGGCTGTCGGTGGGCGCCTGGGTCTATGAGCACTTCGACGAG 55154
|| || || || | ||| ||| || |||||||||||||||||| | |||||||||||
Sbjct 201938 ACTGTCCGCGAGGGGGAGTGGATGGAGGTGGGCGCCTGGGTCTACAAACACTTCGACGAA 201997
Query 55155 GTGTCGGG 55162
|||| ||
Sbjct 201998 CTGTCAGG 202005
Score = 84.2 bits (92), Expect = 8e-12
Identities = 139/201 (69%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 54081 GGTCGCAAGCTGAACAGCATCGAGGTTCATGACCTGCTGTGCATGATCGGTGAGATCGTC 54140
||||||||||| | | | ||| || |||||| | |||| | ||| || |||||
Sbjct 198822 GGTCGCAAGCTCTCCCCCCTGGAGTGCCACGACCTGATCTGCAAGGTCGCCGAAATCGTG 198881
Query 54141 GTGGTGGGCGGTGTGCGTCGCAGTGCGCTCATCAGTCTGTCGAACCTGTCGGATCAGCGC 54200
||||||||||| |||||||| || |||||| ||||| ||||| || | |
Sbjct 198882 GTGGTGGGCGGCGTGCGTCGTTCCGCCCTCATCTCCCTGTCCGACCTGGACGACGACGCC 198941
Query 54201 ATGCGTGACGCCAAGGCTGGCCAGTGGTGGAACGACAACCCGCAACGCGGTCTGGCGAAC 54260
|||| | || ||| | || |||||| | ||| ||||||| |||| |||| |||
Sbjct 198942 TTGCGGGGAGCTAAGACGGGGGCCTGGTGGGAGGACCACCCGCACCGCGCCATGGCCAAC 199001
Query 54261 AACTCCGTGGCCTACACCGAG 54281
||||| | || ||||| |||
Sbjct 199002 AACTCGGCGGTGTACACGGAG 199022
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 187286817695936
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |