Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq53 91.5 6e-14 >seq53 Length=954740 Score = 91.5 bits (100), Expect = 6e-14 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 55035 CTGGAACTGTGGTTACTGTATCAACGTGAGTGGTGTGAGCACAAGCCTTCCGTCACTGTC 55094 ||||| |||| || ||| ||||| | ||||| || |||||||| || ||||||| Sbjct 201878 CTGGAGTTGTGTTTGTCGTACCAACGGTACTGGTGCGAACACAAGCCCTCTATCACTGTG 201937 Query 55095 ACCGTGCGTGACGAGGAATGGCTGTCGGTGGGCGCCTGGGTCTATGAGCACTTCGACGAG 55154 || || || || | ||| ||| || |||||||||||||||||| | ||||||||||| Sbjct 201938 ACTGTCCGCGAGGGGGAGTGGATGGAGGTGGGCGCCTGGGTCTACAAACACTTCGACGAA 201997 Query 55155 GTGTCGGG 55162 |||| || Sbjct 201998 CTGTCAGG 202005 Score = 84.2 bits (92), Expect = 8e-12 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 54081 GGTCGCAAGCTGAACAGCATCGAGGTTCATGACCTGCTGTGCATGATCGGTGAGATCGTC 54140 ||||||||||| | | | ||| || |||||| | |||| | ||| || ||||| Sbjct 198822 GGTCGCAAGCTCTCCCCCCTGGAGTGCCACGACCTGATCTGCAAGGTCGCCGAAATCGTG 198881 Query 54141 GTGGTGGGCGGTGTGCGTCGCAGTGCGCTCATCAGTCTGTCGAACCTGTCGGATCAGCGC 54200 ||||||||||| |||||||| || |||||| ||||| ||||| || | | Sbjct 198882 GTGGTGGGCGGCGTGCGTCGTTCCGCCCTCATCTCCCTGTCCGACCTGGACGACGACGCC 198941 Query 54201 ATGCGTGACGCCAAGGCTGGCCAGTGGTGGAACGACAACCCGCAACGCGGTCTGGCGAAC 54260 |||| | || ||| | || |||||| | ||| ||||||| |||| |||| ||| Sbjct 198942 TTGCGGGGAGCTAAGACGGGGGCCTGGTGGGAGGACCACCCGCACCGCGCCATGGCCAAC 199001 Query 54261 AACTCCGTGGCCTACACCGAG 54281 ||||| | || ||||| ||| Sbjct 199002 AACTCGGCGGTGTACACGGAG 199022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187286817695936