Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq10 188 8e-43 seq102 107 2e-18 >seq10 Length=2191866 Score = 188 bits (208), Expect = 8e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 || ||| | ||| | |||||||| || || || | || ||||||||||||| || | Sbjct 2092372 TTTTGTGAGTGGATCACTTCAACTGAGAACCGCCTTTACATCGGTTGGTTCGGTGTAATC 2092313 Query 163988 ATGATTCCCTGCCTGCTGGCAGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCCT 164047 ||||| || || || || | || || || || |||||||| ||||||| |||||| Sbjct 2092312 ATGATCCCATGTCTTCTTACTGCAACATCAGTATTTATCATCGCTTTCATCGCTGCTCCG 2092253 Query 164048 CCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAAC 164107 || || ||||||||||| || || ||||| || | ||||| || | ||||| |||||| Sbjct 2092252 CCAGTAGACATCGATGGTATTCGTGAACCAGTTTCAGGTTCTCTTCTTTATGGTAACAAC 2092193 Query 164108 ATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATC 164167 |||||| | ||||||||| | || |||||||||||||||| ||||| |||||||| || Sbjct 2092192 ATCATCACAGGTGCTGTTGTTCCAACTTCTAACGCTATCGGCCTGCATTTCTACCCAATT 2092133 Query 164168 TGGGAAGCAGCAAGTCTGGACGAATGG 164194 |||||||| || ||| || || ||| Sbjct 2092132 TGGGAAGCTGCTTCTCTAGATGAGTGG 2092106 >seq102 Length=298891 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 161555 TACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGTCGTGCAGGC 161614 ||| | || ||||| || ||||| || ||| ||||| | ||||| || ||||||||| Sbjct 97698 TACCTGCTGGACGCGGCCGAGGAGGCTGGTATGGACCTGCCGTACTCTTGCCGTGCAGGC 97757 Query 161615 GCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 161674 ||||| || ||||| || || | || || |||||||| ||||| ||||||||| | Sbjct 97758 GCTTGCTCTAGCTGCGCCGGCAAGATTGTGTCGGGCACCGTGGACCAGAGCGACCAGAGC 97817 Query 161675 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGT 161721 |||||||||||| | || || || |||| ||| | || || || || Sbjct 97818 TTCCTGGACGATAAGCAGATGGAGGCTGGCTTCGTGCTCACCTGCGT 97864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557645679679320