Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq10 203 4e-47 seq102 105 8e-18 >seq10 Length=2191866 Score = 203 bits (224), Expect = 4e-47 Identities = 207/270 (77%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 || ||| | ||| | || || ||||| ||||| || || ||||||||||||| || | Sbjct 2092372 TTTTGTGAGTGGATCACTTCAACTGAGAACCGCCTTTACATCGGTTGGTTCGGTGTAATC 2092313 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| || || || | ||||| | || |||||||| ||||||| |||||| Sbjct 2092312 ATGATCCCATGTCTTCTTACTGCAACATCAGTATTTATCATCGCTTTCATCGCTGCTCCG 2092253 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || |||||||| || || || ||||| ||| | |||||||| | |||||||||||| Sbjct 2092252 CCAGTAGACATCGATGGTATTCGTGAACCAGTTTCAGGTTCTCTTCTTTATGGTAACAAC 2092193 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 |||||| | ||||||||||| || |||| ||||| ||||| || || ||||| || || Sbjct 2092192 ATCATCACAGGTGCTGTTGTTCCAACTTCTAACGCTATCGGCCTGCATTTCTACCCAATT 2092133 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTG 169621 |||||||| || ||| ||||| |||||| Sbjct 2092132 TGGGAAGCTGCTTCTCTAGATGAGTGGTTG 2092103 >seq102 Length=298891 Score = 105 bits (116), Expect = 8e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 167448 TACATCCTTGACGCGGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGCCGTGCAGGC 167507 ||| | || |||||||| ||||| || ||| ||||| | ||||| |||||||||||| Sbjct 97698 TACCTGCTGGACGCGGCCGAGGAGGCTGGTATGGACCTGCCGTACTCTTGCCGTGCAGGC 97757 Query 167508 GCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGATCAAAGCGATCAATCC 167567 ||||| || ||||| || || | | || |||||||| || || ||||| || | Sbjct 97758 GCTTGCTCTAGCTGCGCCGGCAAGATTGTGTCGGGCACCGTGGACCAGAGCGACCAGAGC 97817 Query 167568 TTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCTGTGTGTCCTA 167620 |||||||||||| | || || | | || ||| | |||||||| ||| |||| Sbjct 97818 TTCCTGGACGATAAGCAGATGGAGGCTGGCTTCGTGCTCACCTGCGTGGCCTA 97870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592189139497520