Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq67 111 3e-19
seq35 109 1e-18
seq48 102 2e-16
seq37 96.9 7e-15
>seq67
Length=753185
Score = 111 bits (122), Expect = 3e-19
Identities = 93/114 (82%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| || ||||| || || |||||||| | ||||||||| || |||||||||||||||||
Sbjct 68651 ACCGCCGCGCAGACGCAGCACCAGATGGAGCGTGCTTTCCTTCTGGATGTTGTAGTCAGC 68710
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985
|| || ||||||||||| || || || ||||| || |||| ||| || |||||
Sbjct 68711 CAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTC 68764
Score = 109 bits (120), Expect = 1e-18
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || ||||| || || |||||||| | |||||| || || |||||||||||||||||
Sbjct 68279 CCGCCGCGCAGACGCAGCACCAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGCC 68338
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||||||||| || || || ||||| || |||| ||| || |||||| |||
Sbjct 68339 AGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGGGGA 68398
Query 282993 ATACC 282997
|| ||
Sbjct 68399 ATGCC 68403
Score = 87.8 bits (96), Expect = 4e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053
||||||||||||| |||||||| || || ||| | || || || ||||| | || || |
Sbjct 68545 TACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCCGACGACTCAACCT 68604
Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || ||||| ||||| ||||| | ||||| ||||| ||||||||
Sbjct 68605 CCAGGGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 68650
>seq35
Length=1396082
Score = 109 bits (120), Expect = 1e-18
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||||||||| || || ||||| || || ||||| || || || ||||||||||| ||
Sbjct 1305472 CCACCACGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1305413
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || || || || ||||| |||| ||| || ||||| ||||
Sbjct 1305412 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGGA 1305353
Query 282993 ATACC 282997
|| ||
Sbjct 1305352 ATGCC 1305348
Score = 109 bits (120), Expect = 1e-18
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||||||||| || || ||||| || || ||||| || || || ||||||||||| ||
Sbjct 1305843 CCACCACGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1305784
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || || || || ||||| |||| ||| || ||||| ||||
Sbjct 1305783 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGGA 1305724
Query 282993 ATACC 282997
|| ||
Sbjct 1305723 ATGCC 1305719
Score = 104 bits (114), Expect = 5e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| ||||| || || ||||| || || ||||| || || || ||||||||||| ||
Sbjct 1305120 CCACCGCGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1305061
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || || || || ||||| |||| ||| || ||||| ||||
Sbjct 1305060 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGGA 1305001
Query 282993 ATACC 282997
|| ||
Sbjct 1305000 ATGCC 1304996
Score = 104 bits (114), Expect = 5e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| ||||| || || ||||| || || ||||| || || || ||||||||||| ||
Sbjct 1306214 CCACCGCGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1306155
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || || || || ||||| |||| ||| || ||||| ||||
Sbjct 1306154 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGGA 1306095
Query 282993 ATACC 282997
|| ||
Sbjct 1306094 ATGCC 1306090
Score = 102 bits (112), Expect = 2e-16
Identities = 86/106 (81%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053
||||||||||||| || ||||| || || ||| | ||||| |||||||||| ||||| |
Sbjct 1305227 TACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCGACCT 1305168
Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || || || ||||||||||| | ||||| ||||| ||||||||
Sbjct 1305167 CCAGGGTAATGGTCTTACCCGTAAGGGTCTTCACGAAGATCTGCAT 1305122
Score = 102 bits (112), Expect = 2e-16
Identities = 86/106 (81%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053
||||||||||||| || ||||| || || ||| | ||||| |||||||||| ||||| |
Sbjct 1305579 TACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCGACCT 1305520
Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || || || ||||||||||| | ||||| ||||| ||||||||
Sbjct 1305519 CCAGGGTAATGGTCTTACCCGTAAGGGTCTTCACGAAGATCTGCAT 1305474
Score = 102 bits (112), Expect = 2e-16
Identities = 86/106 (81%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053
||||||||||||| || ||||| || || ||| | ||||| |||||||||| ||||| |
Sbjct 1305950 TACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCGACCT 1305891
Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || || || ||||||||||| | ||||| ||||| ||||||||
Sbjct 1305890 CCAGGGTAATGGTCTTACCCGTAAGGGTCTTCACGAAGATCTGCAT 1305845
Score = 86.0 bits (94), Expect = 1e-11
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054
|||||||||||| || ||||| |||||||| | || ||||| ||||| | ||||| ||
Sbjct 1304544 ACCCTCCTTGTCCTGAATCTTGGCTTTTACATTCTCAATAGTATCCGAGGACTCGACCTC 1304485
Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || || ||||| ||||| | ||||| || || ||||||||
Sbjct 1304484 AAGGGTAATAGTCTTCCCCGTAAGGGTCTTGACAAAGATCTGCAT 1304440
>seq48
Length=1037572
Score = 102 bits (112), Expect = 2e-16
Identities = 85/104 (82%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941
||||| | ||||| || |||||||| || || ||||||||||| || || ||||||||
Sbjct 716598 AGGCGCAACACCAGGTGCAACGTGCTCTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGC 716539
Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985
|||||||||||||| || || ||||||||||| || || || ||
Sbjct 716538 CCATCCTCTAGTTGCTTGCCAGCAAAGATCAACCGCTGCTGATC 716495
Score = 100 bits (110), Expect = 6e-16
Identities = 90/113 (80%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || ||||| || |||||||| || | ||||| || || ||||| |||||||| ||
Sbjct 716298 CCGCCGCGCAGACGCAGTACCAGGTGCAGTGTGCTCTCCTTCTGGATATTGTAGTCTGCC 716239
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985
||||| || |||||||||||||| || || || |||||||| || || |||||
Sbjct 716238 AGCGTACGCCCATCCTCTAGTTGCTTGCCAGCGAAGATCAACCGCTGCTGGTC 716186
>seq37
Length=1295102
Score = 96.9 bits (106), Expect = 7e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053
||||||||||||| || ||||| || || || | ||||| |||||||||| || || |
Sbjct 457982 TACCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGACTCCACCT 457923
Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|||| ||||| ||||||||||| | ||||| ||||| || |||||
Sbjct 457922 CGAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATTTGCAT 457877
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046722422406154
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |