Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq67 111 3e-19 seq35 109 1e-18 seq48 102 2e-16 seq37 96.9 7e-15 >seq67 Length=753185 Score = 111 bits (122), Expect = 3e-19 Identities = 93/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || ||||| || || |||||||| | ||||||||| || ||||||||||||||||| Sbjct 68651 ACCGCCGCGCAGACGCAGCACCAGATGGAGCGTGCTTTCCTTCTGGATGTTGTAGTCAGC 68710 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || || ||||||||||| || || || ||||| || |||| ||| || ||||| Sbjct 68711 CAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTC 68764 Score = 109 bits (120), Expect = 1e-18 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || ||||| || || |||||||| | |||||| || || ||||||||||||||||| Sbjct 68279 CCGCCGCGCAGACGCAGCACCAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGCC 68338 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||||||||| || || || ||||| || |||| ||| || |||||| ||| Sbjct 68339 AGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGGGGA 68398 Query 282993 ATACC 282997 || || Sbjct 68399 ATGCC 68403 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 ||||||||||||| |||||||| || || ||| | || || || ||||| | || || | Sbjct 68545 TACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCCGACGACTCAACCT 68604 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 68605 CCAGGGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 68650 >seq35 Length=1396082 Score = 109 bits (120), Expect = 1e-18 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || || ||||| || || || ||||||||||| || Sbjct 1305472 CCACCACGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1305413 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || ||||| |||| ||| || ||||| |||| Sbjct 1305412 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGGA 1305353 Query 282993 ATACC 282997 || || Sbjct 1305352 ATGCC 1305348 Score = 109 bits (120), Expect = 1e-18 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || || ||||| || || || ||||||||||| || Sbjct 1305843 CCACCACGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1305784 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || ||||| |||| ||| || ||||| |||| Sbjct 1305783 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGGA 1305724 Query 282993 ATACC 282997 || || Sbjct 1305723 ATGCC 1305719 Score = 104 bits (114), Expect = 5e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || ||||| || || ||||| || || || ||||||||||| || Sbjct 1305120 CCACCGCGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1305061 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || ||||| |||| ||| || ||||| |||| Sbjct 1305060 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGGA 1305001 Query 282993 ATACC 282997 || || Sbjct 1305000 ATGCC 1304996 Score = 104 bits (114), Expect = 5e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || ||||| || || ||||| || || || ||||||||||| || Sbjct 1306214 CCACCGCGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1306155 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || ||||| |||| ||| || ||||| |||| Sbjct 1306154 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGGA 1306095 Query 282993 ATACC 282997 || || Sbjct 1306094 ATGCC 1306090 Score = 102 bits (112), Expect = 2e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 ||||||||||||| || ||||| || || ||| | ||||| |||||||||| ||||| | Sbjct 1305227 TACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCGACCT 1305168 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || || ||||||||||| | ||||| ||||| |||||||| Sbjct 1305167 CCAGGGTAATGGTCTTACCCGTAAGGGTCTTCACGAAGATCTGCAT 1305122 Score = 102 bits (112), Expect = 2e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 ||||||||||||| || ||||| || || ||| | ||||| |||||||||| ||||| | Sbjct 1305579 TACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCGACCT 1305520 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || || ||||||||||| | ||||| ||||| |||||||| Sbjct 1305519 CCAGGGTAATGGTCTTACCCGTAAGGGTCTTCACGAAGATCTGCAT 1305474 Score = 102 bits (112), Expect = 2e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 ||||||||||||| || ||||| || || ||| | ||||| |||||||||| ||||| | Sbjct 1305950 TACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCGACCT 1305891 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || || ||||||||||| | ||||| ||||| |||||||| Sbjct 1305890 CCAGGGTAATGGTCTTACCCGTAAGGGTCTTCACGAAGATCTGCAT 1305845 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||| || ||||| |||||||| | || ||||| ||||| | ||||| || Sbjct 1304544 ACCCTCCTTGTCCTGAATCTTGGCTTTTACATTCTCAATAGTATCCGAGGACTCGACCTC 1304485 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || ||||| ||||| | ||||| || || |||||||| Sbjct 1304484 AAGGGTAATAGTCTTCCCCGTAAGGGTCTTGACAAAGATCTGCAT 1304440 >seq48 Length=1037572 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 ||||| | ||||| || |||||||| || || ||||||||||| || || |||||||| Sbjct 716598 AGGCGCAACACCAGGTGCAACGTGCTCTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGC 716539 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 |||||||||||||| || || ||||||||||| || || || || Sbjct 716538 CCATCCTCTAGTTGCTTGCCAGCAAAGATCAACCGCTGCTGATC 716495 Score = 100 bits (110), Expect = 6e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || ||||| || |||||||| || | ||||| || || ||||| |||||||| || Sbjct 716298 CCGCCGCGCAGACGCAGTACCAGGTGCAGTGTGCTCTCCTTCTGGATATTGTAGTCTGCC 716239 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 ||||| || |||||||||||||| || || || |||||||| || || ||||| Sbjct 716238 AGCGTACGCCCATCCTCTAGTTGCTTGCCAGCGAAGATCAACCGCTGCTGGTC 716186 >seq37 Length=1295102 Score = 96.9 bits (106), Expect = 7e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 ||||||||||||| || ||||| || || || | ||||| |||||||||| || || | Sbjct 457982 TACCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGACTCCACCT 457923 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| ||||| ||||||||||| | ||||| ||||| || ||||| Sbjct 457922 CGAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATTTGCAT 457877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046722422406154