Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq67 131 2e-25 seq35 113 4e-20 seq48 104 2e-17 >seq67 Length=753185 Score = 131 bits (144), Expect = 2e-25 Identities = 116/144 (81%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 41616 CAAATCATCGTACATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCT 41675 |||| || || || || | |||||||| ||||| | ||||||||| ||||||||||||| Sbjct 68260 CAAACCAGCGAACTACAGC-CCGCCGCGCAGACGCAGCACCAGATGGAGCGTGCTCTCCT 68318 Query 41676 TCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCA 41735 |||| ||||| ||||| | ||||| || | || || ||||||||||||||||| |||| Sbjct 68319 TCTGGATGTTGTAGTCAGCCAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCA 68378 Query 41736 GGCGCTGTTGGTCCGCGGGAACGC 41759 | ||||| ||||| | ||||| || Sbjct 68379 GACGCTGCTGGTCAGGGGGAATGC 68402 Score = 125 bits (138), Expect = 7e-24 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | ||||||||| |||||||| |||||||| ||||| ||||| | Sbjct 68652 CCGCCGCGCAGACGCAGCACCAGATGGAGCGTGCTTTCCTTCTGGATGTTGTAGTCAGCC 68711 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || ||||||||||||||||| ||||| ||||| ||||||| ||| Sbjct 68712 AGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGA 68771 Query 41756 ACGC 41759 | || Sbjct 68772 ATGC 68775 >seq35 Length=1396082 Score = 113 bits (124), Expect = 4e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||||| |||| |||||||||||||||||||| ||||| | Sbjct 1305121 GCCACCGCGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGC 1305062 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||||||||| || || ||||| ||||| ||||||| || Sbjct 1305061 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGG 1305002 Query 41755 AACGC 41759 || || Sbjct 1305001 AATGC 1304997 Score = 111 bits (122), Expect = 1e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||||| |||| |||||||||||||||||||| ||||| | Sbjct 1306214 CCACCGCGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1306155 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||| || || ||||| ||||| ||||||| ||| Sbjct 1306154 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGGA 1306095 Query 41756 ACGC 41759 | || Sbjct 1306094 ATGC 1306091 Score = 109 bits (120), Expect = 5e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| |||| |||||||||||||||||||| ||||| | Sbjct 1305473 GCCACCACGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGC 1305414 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||||||||| || || ||||| ||||| ||||||| || Sbjct 1305413 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGG 1305354 Query 41755 AACGC 41759 || || Sbjct 1305353 AATGC 1305349 Score = 109 bits (120), Expect = 5e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| |||| |||||||||||||||||||| ||||| | Sbjct 1305844 GCCACCACGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGC 1305785 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||||||||| || || ||||| ||||| ||||||| || Sbjct 1305784 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGG 1305725 Query 41755 AACGC 41759 || || Sbjct 1305724 AATGC 1305720 >seq48 Length=1037572 Score = 104 bits (114), Expect = 2e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || |||||||| |||| ||||||||||||||| ||||| || |||| ||| |||||| Sbjct 716598 AGGCGCAACACCAGGTGCAACGTGCTCTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGC 716539 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGC 41759 | || || || |||||||| || || |||| ||||| || |||| ||||| || Sbjct 716538 CCATCCTCTAGTTGCTTGCCAGCAAAGATCAACCGCTGCTGATCCGGGGGAATGC 716484 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| ||||| | ||||| ||||| |||||||||||||| || || ||||| | Sbjct 716299 GCCGCCGCGCAGACGCAGTACCAGGTGCAGTGTGCTCTCCTTCTGGATATTGTAGTCTGC 716240 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || ||| | || || || |||||||| ||||| |||| ||||| ||||| | || Sbjct 716239 CAGCGTACGCCCATCCTCTAGTTGCTTGCCAGCGAAGATCAACCGCTGCTGGTCGGGAGG 716180 Query 41755 AACGC 41759 || || Sbjct 716179 AATGC 716175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462296770721200