Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq67 131 2e-25
seq35 113 4e-20
seq48 104 2e-17
>seq67
Length=753185
Score = 131 bits (144), Expect = 2e-25
Identities = 116/144 (81%), Gaps = 1/144 (1%)
Strand=Plus/Plus
Query 41616 CAAATCATCGTACATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCT 41675
|||| || || || || | |||||||| ||||| | ||||||||| |||||||||||||
Sbjct 68260 CAAACCAGCGAACTACAGC-CCGCCGCGCAGACGCAGCACCAGATGGAGCGTGCTCTCCT 68318
Query 41676 TCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCA 41735
|||| ||||| ||||| | ||||| || | || || ||||||||||||||||| ||||
Sbjct 68319 TCTGGATGTTGTAGTCAGCCAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCA 68378
Query 41736 GGCGCTGTTGGTCCGCGGGAACGC 41759
| ||||| ||||| | ||||| ||
Sbjct 68379 GACGCTGCTGGTCAGGGGGAATGC 68402
Score = 125 bits (138), Expect = 7e-24
Identities = 102/124 (82%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|||||||| ||||| | ||||||||| |||||||| |||||||| ||||| ||||| |
Sbjct 68652 CCGCCGCGCAGACGCAGCACCAGATGGAGCGTGCTTTCCTTCTGGATGTTGTAGTCAGCC 68711
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || || ||||||||||||||||| ||||| ||||| ||||||| |||
Sbjct 68712 AGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGA 68771
Query 41756 ACGC 41759
| ||
Sbjct 68772 ATGC 68775
>seq35
Length=1396082
Score = 113 bits (124), Expect = 4e-20
Identities = 100/125 (80%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| ||||| | |||||| |||| |||||||||||||||||||| ||||| |
Sbjct 1305121 GCCACCGCGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGC 1305062
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| | || || ||||||||||| || || ||||| ||||| ||||||| ||
Sbjct 1305061 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGG 1305002
Query 41755 AACGC 41759
|| ||
Sbjct 1305001 AATGC 1304997
Score = 111 bits (122), Expect = 1e-19
Identities = 99/124 (80%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | |||||| |||| |||||||||||||||||||| ||||| |
Sbjct 1306214 CCACCGCGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1306155
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || || ||||||||||| || || ||||| ||||| ||||||| |||
Sbjct 1306154 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGGA 1306095
Query 41756 ACGC 41759
| ||
Sbjct 1306094 ATGC 1306091
Score = 109 bits (120), Expect = 5e-19
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | |||||| |||| |||||||||||||||||||| ||||| |
Sbjct 1305473 GCCACCACGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGC 1305414
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| | || || ||||||||||| || || ||||| ||||| ||||||| ||
Sbjct 1305413 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGG 1305354
Query 41755 AACGC 41759
|| ||
Sbjct 1305353 AATGC 1305349
Score = 109 bits (120), Expect = 5e-19
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | |||||| |||| |||||||||||||||||||| ||||| |
Sbjct 1305844 GCCACCACGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGC 1305785
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| | || || ||||||||||| || || ||||| ||||| ||||||| ||
Sbjct 1305784 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGG 1305725
Query 41755 AACGC 41759
|| ||
Sbjct 1305724 AATGC 1305720
>seq48
Length=1037572
Score = 104 bits (114), Expect = 2e-17
Identities = 92/115 (80%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || |||||||| |||| ||||||||||||||| ||||| || |||| ||| ||||||
Sbjct 716598 AGGCGCAACACCAGGTGCAACGTGCTCTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGC 716539
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGC 41759
| || || || |||||||| || || |||| ||||| || |||| ||||| ||
Sbjct 716538 CCATCCTCTAGTTGCTTGCCAGCAAAGATCAACCGCTGCTGATCCGGGGGAATGC 716484
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||||||||| ||||| | ||||| ||||| |||||||||||||| || || ||||| |
Sbjct 716299 GCCGCCGCGCAGACGCAGTACCAGGTGCAGTGTGCTCTCCTTCTGGATATTGTAGTCTGC 716240
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| || ||| | || || || |||||||| ||||| |||| ||||| ||||| | ||
Sbjct 716239 CAGCGTACGCCCATCCTCTAGTTGCTTGCCAGCGAAGATCAACCGCTGCTGGTCGGGAGG 716180
Query 41755 AACGC 41759
|| ||
Sbjct 716179 AATGC 716175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462296770721200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |