Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq3997 104 5e-17
seq22550 98.7 2e-15
seq13828 98.7 2e-15
seq11913 98.7 2e-15
seq11781 98.7 2e-15
seq9953 98.7 2e-15
seq6417 98.7 2e-15
seq6394 98.7 2e-15
seq5894 98.7 2e-15
seq5691 98.7 2e-15
seq5278 98.7 2e-15
seq4392 98.7 2e-15
seq1545 98.7 2e-15
seq10050 95.1 3e-14
seq6495 95.1 3e-14
>seq3997
Length=108068
Score = 104 bits (114), Expect = 5e-17
Identities = 336/516 (65%), Gaps = 12/516 (2%)
Strand=Plus/Minus
Query 230128 AACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAA--ATCGTTTGCCGAGCGTC 230185
|| ||||| |||||||| | ||||||| | || | | | | |||||| ||||||||||
Sbjct 89987 AAGAAGGCCAAGTGGGCCCTGAAATGGATCGA--CGGCTCAGAATCGTTCGCCGAGCGTC 89930
Query 230186 TCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTT 230245
|||| || | | ||| || || || || | || ||||| || |||||||| || ||||
Sbjct 89929 TCGTGGCGTTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGAAGCTTCTGCGCGATATTTT 89870
Query 230246 GGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCG 230305
|||| ||| || | ||||| || || | | || |||||| | ||| || |
Sbjct 89869 GGCTCAAGAAGCGCGGGTTAATGCCGGGACTGACTTTCTCGAACGAGCTAATCTCGCGAG 89810
Query 230306 ACGAGGGTCTCCATCAACAGTTCGGCGAGCTT-ATGTATTCAAAGCTCCAGA---ACAAG 230361
||||||| || || | ||| ||| |||| |||| || | | || | |||
Sbjct 89809 ACGAGGGCCTTCACTGCGACTTC-GCGTGCTTGCTGTA---CGAGTTACTGAGTCAGAAG 89754
Query 230362 CTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTC 230421
|| ||| ||| ||| | | || || || || | || | ||||||
Sbjct 89753 CTGAGCGAGGAGCGATTCAGGGGTATCGTGAGCGACGCGGTGGATATAGAGAGAGAGTTC 89694
Query 230422 ATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTAC 230481
| || |||||| | || || ||| | || ||||||| ||| || ||| | | ||||
Sbjct 89693 GTGTGCGACGCTCTGCCGTGCGCCCTGGTGGGTATGAACGGTGATCTGATGTGCCGGTAC 89634
Query 230482 ATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCT 230541
||||| || || || || | |||| ||||| | || | | |||| | ||| |
Sbjct 89633 ATCGAGTTTGTGGCGGATAGGCTTTTGGTTGCGTTGGGATGTGGGAAATTTTACGGTGCA 89574
Query 230542 AAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAA 230601
|||| || |||| | |||||||| || | || |||||||| || ||||| ||
Sbjct 89573 CAGAATCCGTTTGACTGGATGGAGCTGATCAGTTTGCAGGGGAAGACGAATTTCTTTGAG 89514
Query 230602 AAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637
||| | || | || || |||| | || |||||||
Sbjct 89513 AAGAGGGTTGGGGAGTACCAGAAGGCTTCTGTGATG 89478
>seq22550
Length=273999
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 97510 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 97451
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 97450 CCCACGGTGGGC 97439
>seq13828
Length=44362
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 7240 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7181
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 7180 CCCACGGTGGGC 7169
>seq11913
Length=14185
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 5445 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5386
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 5385 CCCACGGTGGGC 5374
>seq11781
Length=99180
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 5415 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5474
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 5475 CCCACGGTGGGC 5486
>seq9953
Length=87991
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 68213 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 68154
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 68153 CCCACGGTGGGC 68142
>seq6417
Length=49675
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 40810 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 40751
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 40750 CCCACGGTGGGC 40739
>seq6394
Length=100723
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 63860 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 63801
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 63800 CCCACGGTGGGC 63789
>seq5894
Length=21064
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 18895 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18954
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 18955 CCCACGGTGGGC 18966
>seq5691
Length=70855
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 43162 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 43103
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 43102 CCCACGGTGGGC 43091
>seq5278
Length=123541
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 111383 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 111442
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 111443 CCCACGGTGGGC 111454
>seq4392
Length=29992
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 21240 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 21181
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 21180 CCCACGGTGGGC 21169
>seq1545
Length=66826
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 66517 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 66458
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 66457 CCCACGGTGGGC 66446
>seq10050
Length=78927
Score = 95.1 bits (104), Expect = 3e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 8056 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7997
Query 165770 CCCACGATGGGC 165781
||| || |||||
Sbjct 7996 CCCTCGGTGGGC 7985
>seq6495
Length=167992
Score = 95.1 bits (104), Expect = 3e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 163246 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 163305
Query 165770 CCCACGATGGGC 165781
|||||| | |||
Sbjct 163306 CCCACGGTCGGC 163317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057461840400230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |