Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3997 104 5e-17 seq22550 98.7 2e-15 seq13828 98.7 2e-15 seq11913 98.7 2e-15 seq11781 98.7 2e-15 seq9953 98.7 2e-15 seq6417 98.7 2e-15 seq6394 98.7 2e-15 seq5894 98.7 2e-15 seq5691 98.7 2e-15 seq5278 98.7 2e-15 seq4392 98.7 2e-15 seq1545 98.7 2e-15 seq10050 95.1 3e-14 seq6495 95.1 3e-14 >seq3997 Length=108068 Score = 104 bits (114), Expect = 5e-17 Identities = 336/516 (65%), Gaps = 12/516 (2%) Strand=Plus/Minus Query 230128 AACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAA--ATCGTTTGCCGAGCGTC 230185 || ||||| |||||||| | ||||||| | || | | | | |||||| |||||||||| Sbjct 89987 AAGAAGGCCAAGTGGGCCCTGAAATGGATCGA--CGGCTCAGAATCGTTCGCCGAGCGTC 89930 Query 230186 TCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTT 230245 |||| || | | ||| || || || || | || ||||| || |||||||| || |||| Sbjct 89929 TCGTGGCGTTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGAAGCTTCTGCGCGATATTTT 89870 Query 230246 GGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCG 230305 |||| ||| || | ||||| || || | | || |||||| | ||| || | Sbjct 89869 GGCTCAAGAAGCGCGGGTTAATGCCGGGACTGACTTTCTCGAACGAGCTAATCTCGCGAG 89810 Query 230306 ACGAGGGTCTCCATCAACAGTTCGGCGAGCTT-ATGTATTCAAAGCTCCAGA---ACAAG 230361 ||||||| || || | ||| ||| |||| |||| || | | || | ||| Sbjct 89809 ACGAGGGCCTTCACTGCGACTTC-GCGTGCTTGCTGTA---CGAGTTACTGAGTCAGAAG 89754 Query 230362 CTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTC 230421 || ||| ||| ||| | | || || || || | || | |||||| Sbjct 89753 CTGAGCGAGGAGCGATTCAGGGGTATCGTGAGCGACGCGGTGGATATAGAGAGAGAGTTC 89694 Query 230422 ATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTAC 230481 | || |||||| | || || ||| | || ||||||| ||| || ||| | | |||| Sbjct 89693 GTGTGCGACGCTCTGCCGTGCGCCCTGGTGGGTATGAACGGTGATCTGATGTGCCGGTAC 89634 Query 230482 ATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCT 230541 ||||| || || || || | |||| ||||| | || | | |||| | ||| | Sbjct 89633 ATCGAGTTTGTGGCGGATAGGCTTTTGGTTGCGTTGGGATGTGGGAAATTTTACGGTGCA 89574 Query 230542 AAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAA 230601 |||| || |||| | |||||||| || | || |||||||| || ||||| || Sbjct 89573 CAGAATCCGTTTGACTGGATGGAGCTGATCAGTTTGCAGGGGAAGACGAATTTCTTTGAG 89514 Query 230602 AAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||| | || | || || |||| | || ||||||| Sbjct 89513 AAGAGGGTTGGGGAGTACCAGAAGGCTTCTGTGATG 89478 >seq22550 Length=273999 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 97510 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 97451 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 97450 CCCACGGTGGGC 97439 >seq13828 Length=44362 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 7240 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7181 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7180 CCCACGGTGGGC 7169 >seq11913 Length=14185 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 5445 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5386 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5385 CCCACGGTGGGC 5374 >seq11781 Length=99180 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 5415 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5474 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5475 CCCACGGTGGGC 5486 >seq9953 Length=87991 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 68213 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 68154 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 68153 CCCACGGTGGGC 68142 >seq6417 Length=49675 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 40810 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 40751 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 40750 CCCACGGTGGGC 40739 >seq6394 Length=100723 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 63860 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 63801 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 63800 CCCACGGTGGGC 63789 >seq5894 Length=21064 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 18895 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18954 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 18955 CCCACGGTGGGC 18966 >seq5691 Length=70855 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 43162 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 43103 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 43102 CCCACGGTGGGC 43091 >seq5278 Length=123541 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 111383 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 111442 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 111443 CCCACGGTGGGC 111454 >seq4392 Length=29992 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 21240 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 21181 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 21180 CCCACGGTGGGC 21169 >seq1545 Length=66826 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 66517 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 66458 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 66457 CCCACGGTGGGC 66446 >seq10050 Length=78927 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 8056 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7997 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 7996 CCCTCGGTGGGC 7985 >seq6495 Length=167992 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 163246 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 163305 Query 165770 CCCACGATGGGC 165781 |||||| | ||| Sbjct 163306 CCCACGGTCGGC 163317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057461840400230