Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq6526 163 3e-35 seq3997 129 6e-25 seq8535 125 7e-24 >seq6526 Length=28452 Score = 163 bits (180), Expect = 3e-35 Identities = 317/465 (68%), Gaps = 5/465 (1%) Strand=Plus/Plus Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 || ||||||||||| || || |||||||||| ||| || ||||| || || || | Sbjct 21890 CACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTGAGA 21949 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083 || ||||| || || || || | ||||||||||||| ||| || || ||||| Sbjct 21950 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAG 22009 Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA 17143 || ||||||| | | || |||||||| | || ||||||| ||| | || ||| Sbjct 22010 ATCCCCTCGAAGCACGCGAACGCGATGAGTCTTTCGGCGAACGATTCTGAACCGT--CGA 22067 Query 17144 ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTA 17203 |||||||| | |||||| ||| |||| | | |||| || || || || || | Sbjct 22068 -TCCATTTCAACGCCCACTTGGCCTTTTTTTCCACGCAAGGGATGGTCTCGATCGCGTGG 22126 Query 17204 AATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATT 17263 || | || || || |||| | || || | |||| || |||||||||||| Sbjct 22127 AAGAGGCGGTCCTTCTCGGCCGGGTCCCTGATGTAGGATTCGAGCAGGAGGCTGTACATT 22186 Query 17264 TCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATT 17323 |||||||| |||||||| ||||| || || || ||||| ||| || ||||| || | | Sbjct 22187 TCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCCCGCGCTTCGGCAACT 22246 Query 17324 TGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCG 17383 || || ||| ||| || | || || || ||| |||||||||||| |||||| Sbjct 22247 TGTACCTCCTTCATGAAACGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCG 22306 Query 17384 AAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC--CGGTG 17426 || || || | | || || ||||| | || ||||| ||||| Sbjct 22307 AAGAAGGCGAGGACGTGTTTGATGAAGTGCTTCTCGTCGGCGGTG 22351 >seq3997 Length=108068 Score = 129 bits (142), Expect = 6e-25 Identities = 396/603 (66%), Gaps = 17/603 (3%) Strand=Plus/Plus Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA-CG 16854 |||||||| ||||| || || || ||||||| | || | |||||| || | || || Sbjct 89614 CTATCCGCCACAAACTCGATGTACCGGCACATCAGATCACCGTTCATACCCACCAGGGCG 89673 Query 16855 TACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACT 16914 || || ||||| || || || | ||||||| | ||||| || | | |||| Sbjct 89674 CAC-GGCAGAGCGTCGCACACGAACTCTCTCTCTATATCCACCGCGTCGCTCACGATACC 89732 Query 16915 AGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATC 16974 | ||| |||||| | | | || | || | ||| || || ||||| || Sbjct 89733 CCTGAATCGCTCCTCGCTCAGCTTCTGACTCAGTAACTCGTACAGCAAGCACGCGAAGTC 89792 Query 16975 GCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTT 17034 ||| || | |||||||||| ||| || ||||| || || |||| || ||||| Sbjct 89793 GCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAGAAAGTCAGTCCCGGCATTAA 89852 Query 17035 TCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGAC 17094 || || ||||| | ||||||||||||| ||| || || ||||| || ||||| || Sbjct 89853 CCCGCGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCCAC 89912 Query 17095 GGATGCAAACGCGATTAATCGTTCGGCGTACG--TC-GCGTCTTTGTTACGAATCCATTT 17151 | | || ||||| | | || |||||| ||| || | | | | | |||||||| Sbjct 89913 GCACGCGAACGCCACGAGACGCTCGGCGAACGATTCTGAGCCGTCG------ATCCATTT 89966 Query 17152 CTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTT 17211 | | |||||| ||| || | | | |||| || || || || || | || | Sbjct 89967 CAGGGCCCACTTGGCCTTCTTCACCACGCAAGGGATGGTCTCGATTGCGTGGAAGA--GG 90024 Query 17212 CTCTTTTTCCTGTAG--GTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAG 17269 | | ||| | || ||| | || || | |||| ||| ||||||||||| |||||| Sbjct 90025 CGGTGCTTCTCGGAGGAGTCCTTGATGTAGGATTCGAGGAGGAGGCTGTACATCTCGGAG 90084 Query 17270 TGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTTGAAC 17328 || |||||||| || || ||||| || || || ||||| ||||| || || | || || Sbjct 90085 TGGATGTTCTCGATCGCGATCTGGAAGCCATAGAAAGC-GCGGGCCTCAGCGACCTGGAC 90143 Query 17329 TTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAA 17388 ||| ||| || | || ||||| ||| |||||||||||| || ||||| || Sbjct 90144 CTCCTTCATGAAGCGGCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCTGCGAAGAA 90203 Query 17389 CGC 17391 || Sbjct 90204 GGC 90206 >seq8535 Length=22056 Score = 125 bits (138), Expect = 7e-24 Identities = 314/470 (67%), Gaps = 9/470 (2%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||||||||| || || |||||||||| ||| || ||||| || || || Sbjct 6593 AGGCACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTG 6652 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | || ||||| || || || || | ||||||||||||| ||| || || ||| Sbjct 6653 AGACCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAG 6712 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || ||||| ||| | || || ||||| | | ||||||| ||| | || Sbjct 6713 AAGATCCCCTCCACGCACGCGAATGCGATGAGCCTTTCGGCGAACGATTCTGAACCGT-- 6770 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 ||| |||| ||| | |||||| || |||| | | |||| | || || || || Sbjct 6771 CGA-TCCACTTCAACGCCCACTTTGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCG 6829 Query 17201 TTAAATAATTTCTCTTTTTC-CTGTAG-GTCGATTATATACGTATCGATGAGTAGGCTGT 17258 | || | | || ||| | | | ||| | || || | |||| || ||||||| Sbjct 6830 TGGAAGAGG--CGGTTCTTCTCGGCCGAGTCCTTGATGTAGGATTCGAGCAGGAGGCTGT 6887 Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCG 17318 ||||||||||||| |||||||| ||||| || || || ||||| ||| || ||||| | Sbjct 6888 ACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCTTCGG 6947 Query 17319 CTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCG 17378 | | ||| || ||| |||||| | || || || ||| |||||||| || | Sbjct 6948 CGACTTGTACCTCCTTCATGAATCGGCCAGCGAGGTTCTCGAGGACGATGCCATCTGAGG 7007 Query 17379 CGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC--CGGTG 17426 ||||||| || || | | || | ||||| | || ||||| ||||| Sbjct 7008 CGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGCGGTG 7057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517372733300280