Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq6526 125 8e-24
seq8535 123 3e-23
seq3997 95.1 1e-14
seq10 93.3 5e-14
seq6300 89.7 6e-13
seq15419 86.0 7e-12
>seq6526
Length=28452
Score = 125 bits (138), Expect = 8e-24
Identities = 370/563 (66%), Gaps = 13/563 (2%)
Strand=Plus/Plus
Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190
||| || |||||||||||||| | |||||||||| || | ||||| || || ||
Sbjct 21886 CAAGCACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGT 21945
Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 24249
||| || ||||||| || |||||||| ||||||||||| | |||| || ||| || |
Sbjct 21946 GAGACCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGA 22004
Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG--TC 24307
|||| || || || | ||| || || || |||||||| | | || ||| |
Sbjct 22005 AGAAGATCCCCTCGAAGCACGCGAACGCGATGAGTCTTTCGGC--GAACGATTCTGAACC 22062
Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367
| ||||| || ||||| | |||||| |||| || ||||| || ||||| || ||
Sbjct 22063 GTCGATCCATTTCAACGCCCACTTGGCCTTTTTTTCCACGCAAGGGATGGTCTCGATCGC 22122
Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427
| ||||| || || || || | | || | || | || || || ||
Sbjct 22123 GTGGAAGAGGCGGTCCTTCTCGGCCGGGTCCCTGATGTAGGATTCGAGCAGGAGGCTGTA 22182
Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487
|||||| || || ||||| || ||||| ||||| || |||||||| | || ||||
Sbjct 22183 CATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCCCGCGCTTCGGC 22242
Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547
|| ||||| || | || || | || | || || || || ||||| |||
Sbjct 22243 AACTTGTACCTCCTTCATGAAACGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGC 22302
Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATT 24604
|| || || || | || ||||| || || | || ||||| | || || | |
Sbjct 22303 GGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCGTC 22362
Query 24605 CCAAT--CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662
||| | | ||| || | || | |||||| || ||| | ||||| ||||| || ||
Sbjct 22363 CCAGTGGCGTTG--GTCCTGCGACAGATCCACCTCCTCCGCCGTCCAGAATGACGCTTCA 22420
Query 24663 GCCTTTTTATACATATTCCAGAT 24685
||||| || ||||| | ||||||
Sbjct 22421 GCCTTCTTGTACATCTCCCAGAT 22443
>seq8535
Length=22056
Score = 123 bits (136), Expect = 3e-23
Identities = 393/602 (65%), Gaps = 13/602 (2%)
Strand=Plus/Plus
Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194
|| |||||||||||||| | |||||||||| || | ||||| || || |||||
Sbjct 6596 CACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAGA 6655
Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253
|| ||||||| || |||||||| ||||||||||| | |||| || ||| || |||||
Sbjct 6656 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGAA 6714
Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG--TCATGT 24311
|| || || || ||| || || || || ||||| | | || ||| | |
Sbjct 6715 GATCCCCTCCACGCACGCGAATGCGATGAGCCTTTCGGC--GAACGATTCTGAACCGTCG 6772
Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371
|||||||| ||||| | ||||| |||| || ||||| | ||||| || || |
Sbjct 6773 ATCCACTTCAACGCCCACTTTGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGTGG 6832
Query 24372 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431
||||| ||| || || || || | || | || | || || || ||||||
Sbjct 6833 AAGAGGCGGTTCTTCTCGGCCGAGTCCTTGATGTAGGATTCGAGCAGGAGGCTGTACATT 6892
Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491
|| || || ||||| || ||||| ||||| || |||||||| | || |||| |
Sbjct 6893 TCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCTTCGGCGACT 6952
Query 24492 TGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551
||||| || | ||||| | || | || || || || || || ||| ||
Sbjct 6953 TGTACCTCCTTCATGAATCGGCCAGCGAGGTTCTCGAGGACGATGCCATCTGAGGCGGCG 7012
Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTCCAA 24608
|| || || | || || | || || | || ||||| | || || | || |||
Sbjct 7013 AAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCATCCCAG 7072
Query 24609 T--CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666
| | ||| || | || | ||||||||| ||| | ||||| || || || || ||||
Sbjct 7073 TGGCGTTG--GTCCTGCGACAGATCCACTTCCTCCGCCGTCCAGAACGACGCTTCGGCCT 7130
Query 24667 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGAT 24726
| || ||||| | |||||| | | || ||||| || || || |||| || ||| |
Sbjct 7131 TCTTGTACATCTCCCAGATCTGCGGGTACTGAATCGGGAACATGCAGAATCGATCTGGGT 7190
Query 24727 TT 24728
||
Sbjct 7191 TT 7192
>seq3997
Length=108068
Score = 95.1 bits (104), Expect = 1e-14
Identities = 367/570 (64%), Gaps = 19/570 (3%)
Strand=Plus/Plus
Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186
||| ||| || ||||| |||||||| || |||||||||| |||| ||||| || |
Sbjct 89774 ACAGCAAGCACGCGAAGTCGCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAGA 89833
Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245
| || ||||| ||||||| || ||||| || ||||||||||| | |||| || |||
Sbjct 89834 AAGTCAGTCCCGGCATTAACCCGCGCTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCG 89892
Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC----CGGC 24301
|| ||||| || || || || ||| || || | || | || | ||| | |
Sbjct 89893 GAGAAGAAGATCCCCTCCACGCACGCGAACGCCACGAGACGCTCGGC-GAACGATTCTGA 89951
Query 24302 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 24361
|| ||| ||||| || | ||||| | ||||||||| || ||||| || |||||
Sbjct 89952 GCCGTC---GATCCATTTCAGGGCCCACTTGGCCTTCTTCACCACGCAAGGGATGGTCTC 90008
Query 24362 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 24421
|| || | ||||| || || || || || | || | || | | ||
Sbjct 90009 GATTGCGTGGAAGAGGCGGTGCTTCTCGGAGGAGTCCTTGATGTAGGATTCGAGGAGGAG 90068
Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481
|| ||||| || || || ||||| || || || || || || || |||||| | ||
Sbjct 90069 GCTGTACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCCATAGAAAGCGCGGGC 90128
Query 24482 CTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541
||| | | ||| || || | || || | || | ||| || || || |||||
Sbjct 90129 CTCAGCGACCTGGACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGAGGACGATGCCGTC 90188
Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA--GT 24599
|||||| || || || | || || || || | | ||||| | |||| ||
Sbjct 90189 GGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGCCTCTCGTCGGCGGTTAGGGT 90248
Query 24600 TTATTCCAATCATTG----ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 24655
|| ||| || || | || || | ||||| || ||| | ||||| || ||
Sbjct 90249 TTGGTCC---CAGTGGCGAAGGTCAGCGGAGAGGTCCACCTCCTCCGCCGTCCAGAACGA 90305
Query 24656 TGCCTCTGCCTTTTTATACATATTCCAGAT 24685
||||||||||| || ||||| | ||||||
Sbjct 90306 CGCCTCTGCCTTCTTGTACATCTCCCAGAT 90335
>seq10
Length=262601
Score = 93.3 bits (102), Expect = 5e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244
|| || ||||| | || | || |||| ||| |||||| | |||||||| || ||||
Sbjct 128810 CCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACTCGAAGCATTGGAACAACACCA 128751
Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304
||||||| ||||| || || ||||| || || | ||||| |||||| || ||
Sbjct 128750 TTGGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGGATATTATGAACAGAG 128691
Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364
||||| || || || || ||| ||| | || || ||| || |||||||| ||
Sbjct 128690 AGACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAAGGTATCATATATT 128631
Query 54365 CCCTCTATACTATCATCCATCATG 54388
|| || ||||| |||||| |||||
Sbjct 128630 CCTTCAATACTGTCATCCTTCATG 128607
>seq6300
Length=25064
Score = 89.7 bits (98), Expect = 6e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244
|| || ||||| | || | || |||| |||| |||||| | |||||||| | ||||
Sbjct 13282 CCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGAAGCATTGGAACCACACCA 13341
Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304
||||||| ||||| || || |||||||| || | ||||| |||||| || ||
Sbjct 13342 TTGGATGTCCCATTTGTTCCACGAATATAGCTGCCGGTAGCACGGATATTATGAACAGAA 13401
Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364
| ||| || || || || |||| ||| | || || ||| || |||||||| ||
Sbjct 13402 ACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCTTTCAAGGTATCATATATT 13461
Query 54365 CCCTCTATACTATCATCCATCATG 54388
|| || || || ||||| |||||
Sbjct 13462 CCTTCAATGCTGTCATCTTTCATG 13485
>seq15419
Length=18895
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/123 (76%), Gaps = 3/123 (2%)
Strand=Plus/Plus
Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194
|| || ||||| ||||| |||||||| |||||| ||| | ||| || || || || |
Sbjct 8786 CAAGCAAAATCACAGTGGAGACCCTCATCTCTAGAAATAAGTTCATTTGAGAATGTCAAG 8845
Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT--CCAGAAAAGA 24252
|| ||||| || || | ||||||||||||||| |||| |||||| | | ||||||||
Sbjct 8846 CCCGGCATGAGTCCTCTCTTTTTAAGCCAAAAAATGG-CGCAAAAGCTGAGAAGAAAAGA 8904
Query 24253 AAA 24255
|||
Sbjct 8905 AAA 8907
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593523289564080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |