Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq9252 87.8 2e-12
seq22277 84.2 2e-11
seq5189 82.4 7e-11
>seq9252
Length=190322
Score = 87.8 bits (96), Expect = 2e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135
|| |||||| | || ||||| || || |||||||| ||||| | ||| |||||||
Sbjct 60168 GACCAACAACGCCTGATCTTCGCCGGAAAACAACTAGAAGACGGCCGAACCCTGGCCGAC 60227
Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
||||| || ||||||||||| || || ||| ||||| ||||| | || |||||
Sbjct 60228 TACAACATCCAGAAGGAATCAACGCTCCACCTGGTGCTACGACTTCGCGGAGG 60280
>seq22277
Length=3790
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| || || ||||||| | || || ||||| |||||| ||| ||| | |
Sbjct 1760 ATGCAGATCTTTGTCAAAACCCTCACCGGGAAAACGATTACCCTCGAGGTCGAAAGCTCT 1819
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | | || | ||| ||||||| || || || || | || |||||
Sbjct 1820 GATACCATCGACAATGTCAAGGCAAAAATTCAGGACAAGGAGGGGATCCCACCGGATCAG 1879
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|| || || |||||||| |||||||| ||||| ||| | || | || ||||||||
Sbjct 1880 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAGGATGGCCGCACCCTCGCGGATTACAAC 1939
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170
|| ||||||||||| || || ||| ||||
Sbjct 1940 ATCCAGAAGGAATCGACCCTCCACTTGGT 1968
>seq5189
Length=32747
Score = 82.4 bits (90), Expect = 7e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| || |||| || ||||| || || ||||| || || ||| ||
Sbjct 27242 ATGCAAATCTTGGTCAAGACTTTGACCGGAAAGACCATAACACTTGAGGTGGAGAGTTCA 27183
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | || | ||| |||| | ||||| || ||| || | || ||
Sbjct 27182 GATACCATTGATAATATGAAGGAAAAGGTCCAAGATAAGGAGGGTACCCCTCTGGACCAG 27123
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|||||| | |||||||| || || |||||||| ||| ||| |||| || |||||
Sbjct 27122 CAAAGATTGATCTTTGCTGGGAAGCAACTGGAGGATGGGCGTACTTTGGCTGACTACAAC 27063
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189
||||||||||| || || |||||| ||||| | || |||| || |||
Sbjct 27062 ATTCAGAAGGAGTCGACCCTTCACTTGGTGCTTCGTCTACGTGGTGGG 27015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428196507161255
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |