Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq9252 87.8 2e-12 seq22277 84.2 2e-11 seq5189 82.4 7e-11 >seq9252 Length=190322 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || |||||| | || ||||| || || |||||||| ||||| | ||| ||||||| Sbjct 60168 GACCAACAACGCCTGATCTTCGCCGGAAAACAACTAGAAGACGGCCGAACCCTGGCCGAC 60227 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||||||||| || || ||| ||||| ||||| | || ||||| Sbjct 60228 TACAACATCCAGAAGGAATCAACGCTCCACCTGGTGCTACGACTTCGCGGAGG 60280 >seq22277 Length=3790 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || ||||||| | || || ||||| |||||| ||| ||| | | Sbjct 1760 ATGCAGATCTTTGTCAAAACCCTCACCGGGAAAACGATTACCCTCGAGGTCGAAAGCTCT 1819 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| ||||||| || || || || | || ||||| Sbjct 1820 GATACCATCGACAATGTCAAGGCAAAAATTCAGGACAAGGAGGGGATCCCACCGGATCAG 1879 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || |||||||| |||||||| ||||| ||| | || | || |||||||| Sbjct 1880 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAGGATGGCCGCACCCTCGCGGATTACAAC 1939 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||||||||| || || ||| |||| Sbjct 1940 ATCCAGAAGGAATCGACCCTCCACTTGGT 1968 >seq5189 Length=32747 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| || || ||||| || || ||| || Sbjct 27242 ATGCAAATCTTGGTCAAGACTTTGACCGGAAAGACCATAACACTTGAGGTGGAGAGTTCA 27183 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| |||| | ||||| || ||| || | || || Sbjct 27182 GATACCATTGATAATATGAAGGAAAAGGTCCAAGATAAGGAGGGTACCCCTCTGGACCAG 27123 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | |||||||| || || |||||||| ||| ||| |||| || ||||| Sbjct 27122 CAAAGATTGATCTTTGCTGGGAAGCAACTGGAGGATGGGCGTACTTTGGCTGACTACAAC 27063 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||||||||||| || || |||||| ||||| | || |||| || ||| Sbjct 27062 ATTCAGAAGGAGTCGACCCTTCACTTGGTGCTTCGTCTACGTGGTGGG 27015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428196507161255