Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq7849 98.7 1e-15 seq12303 95.1 2e-14 seq4573 89.7 8e-13 seq19262 86.0 9e-12 >seq7849 Length=122270 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || |||| || ||||| ||||| || || || | ||| | || ||| | Sbjct 80610 ATGCAGATCTTCGTAAAAACCCTAACTGGCAAGACAATCACGCTCGAGGTCGAGAGCTCA 80551 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| |||| | || ||||||||||| || |||||||| || || ||||| Sbjct 80550 -GATACAATTGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGTATTCCTCCGGATCA 80492 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || || ||||||||||| | |||||| | || || | | ||| ||||| Sbjct 80491 GCAGCGCCTGATCTTCGCAGGAAAACAGCTCGAGGATGGCCGCACTCTTGCAGACTATAA 80432 Query 124718 TATTCAAAAAGAATCAAC 124735 || || || || || || Sbjct 80431 CATCCAGAAGGAGTCCAC 80414 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || |||| || ||||| ||||| || || || | ||| | || ||| | Sbjct 80838 ATGCAGATCTTCGTAAAAACCCTAACTGGCAAGACAATCACGCTCGAGGTCGAGAGCTCA 80779 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| |||| | || ||||||||||| || |||||||| || || ||||| Sbjct 80778 -GATACAATTGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGTATTCCTCCGGATCA 80720 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || || ||||||||||| | |||||| | || || | | ||| ||||| Sbjct 80719 GCAGCGCCTGATCTTCGCAGGAAAACAGCTCGAGGATGGCCGCACTCTTGCAGACTATAA 80660 Query 124718 TATTCAAAAAGAATCAAC 124735 || || || || || || Sbjct 80659 CATCCAGAAGGAGTCCAC 80642 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || |||| || ||||| ||||| || || || | ||| | || ||| | Sbjct 81066 ATGCAGATCTTCGTAAAAACCCTAACTGGCAAGACAATCACGCTCGAGGTCGAGAGCTCA 81007 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| |||| | || ||||||||||| || |||||||| || || ||||| Sbjct 81006 -GATACAATTGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGTATTCCTCCGGATCA 80948 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || || ||||||||||| | |||||| | || || | | ||| ||||| Sbjct 80947 GCAGCGCCTGATCTTCGCAGGAAAACAGCTCGAGGATGGCCGCACTCTTGCAGACTATAA 80888 Query 124718 TATTCAAAAAGAATCAAC 124735 || || || || || || Sbjct 80887 CATCCAGAAGGAGTCCAC 80870 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || |||| || ||||| || ||||| || || | ||| |||| ||| Sbjct 80154 ATGCAGATCTTCGTAAAAACCCTAACTGGGAAAACAATCACGCTCGAGGTTGAGAGCTCC 80095 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| ||| | || ||| || ||||| || |||||||| || |||||||| Sbjct 80094 -GACACAATTGATAACGTGAAGGCGAAGATCCAAGACAAGGAAGGTATTCCTCCTGATCA 80036 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || || || ||||| || | |||||| | || || | | ||||| || Sbjct 80035 ACAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGTACCCTCGCTGATTACAA 79976 Query 124718 TATTCAAAAAGAATCAACT 124736 || || || ||||||||| Sbjct 79975 CATACAGAAGGAATCAACT 79957 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || |||| || ||||| ||||| || || || | ||| | || ||| | Sbjct 80382 ATGCAGATCTTCGTAAAAACCCTAACTGGCAAGACAATCACGCTCGAGGTCGAGAGCTCA 80323 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| |||| | || ||||||||||| || |||||||| || || ||||| Sbjct 80322 -GATACAATTGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGTATTCCTCCGGATCA 80264 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || || || |||||||| | ||||| | || || | | || || || Sbjct 80263 GCAGCGCCTGATCTTCGCCGGAAAACAGCTCGAGGACGGCCGTACTCTTGCGGACTACAA 80204 Query 124718 TATTCAAAAAGAATCAAC 124735 || ||||| || || || Sbjct 80203 CATCCAAAAGGAGTCCAC 80186 >seq12303 Length=64598 Score = 95.1 bits (104), Expect = 2e-14 Identities = 165/236 (70%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-A 124592 |||| ||||| || || | ||||| || || |||||||| || ||| | ||| | || | Sbjct 11057 TACAGATGCAGATCTTCGTGAAGACCCTTACCGGCAAAACCATCACTCTCGAGGTGGAGA 10998 Query 124593 GCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT 124652 || || || || |||| | || || ||||||||||| || ||||| ||||| Sbjct 10997 GCTCC-GACACCATCGATAATGTCAAGGCAAAGATTCAAGATAAGGAGGGTATCCCACCG 10939 Query 124653 GATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGAT 124712 || || || ||| | || ||||| || || || || |||||| | || || || | || Sbjct 10938 GACCAGCAGAGGTTGATCTTTGCTGGGAAGCAGTTGGAGGATGGGCGTACCTTGGCCGAC 10879 Query 124713 TATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| || ||||| || | || ||||| | || | || ||||| || Sbjct 10878 TATAACATTCAGAAGGAATCGACCCTTCACTTGGTGCTTCGCCTGCGTGGTGGGAT 10823 >seq4573 Length=120409 Score = 89.7 bits (98), Expect = 8e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || || |||||||| |||||||||||||| ||| | || ||||| || |||||||| Sbjct 7897 CAGGACAAGGAAGGTATCCCACCTGATCAACAGAGGTTGATATTTGCCGGCAAACAATTG 7956 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| | ||||| | | ||| || ||||| || || || ||||| | || ||||| Sbjct 7957 GAAGATGGCCGAACTCTGGCAGACTACAATATCCAGAAGGAGTCAACACTTCACCTGGTT 8016 Query 124749 TT 124750 || Sbjct 8017 TT 8018 >seq19262 Length=114341 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || || |||||||| || ||||||||||| ||| | |||||||| || |||||||| Sbjct 46655 CAGGACAAGGAAGGTATCCCGCCTGATCAACAGAGGTTGATTTTTGCCGGCAAACAATTG 46596 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| | ||||| | | ||| || || || || || || ||||| | || ||||| Sbjct 46595 GAAGATGGCCGAACTCTGGCAGACTACAACATCCAGAAGGAGTCAACACTTCACCTGGTT 46536 Query 124749 TT 124750 || Sbjct 46535 TT 46534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755203668252800