Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq17719 127 2e-24
seq19972 118 1e-21
seq8351 118 1e-21
seq26701 102 9e-17
seq7849 98.7 1e-15
seq5804 91.5 2e-13
seq2905 91.5 2e-13
seq22277 87.8 2e-12
seq21627 87.8 2e-12
seq892 86.0 7e-12
seq12303 84.2 3e-11
seq11833 84.2 3e-11
>seq17719
Length=101630
Score = 127 bits (140), Expect = 2e-24
Identities = 158/214 (74%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
||||| |||| || |||||| || || |||||||| |||| |||||| |||| ||
Sbjct 79438 CACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTCCGGCCGTCCTC 79379
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
|||||||| || ||||| ||||| ||||||||||| | ||| | | ||||||||||
Sbjct 79378 GAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTG 79319
Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152
||| || |||| ||| | | | ||||| || || || |||| || ||||| |
Sbjct 79318 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTTATGGTCT 79260
Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
| |||||||| || || || ||||| ||||||||
Sbjct 79259 TACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 79226
>seq19972
Length=4408
Score = 118 bits (130), Expect = 1e-21
Identities = 156/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
||||| |||| || |||||| || || ||||| || |||| |||||| |||| ||
Sbjct 4020 CACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTCCGGCCGTCCTC 3961
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
|||||||| || ||||| ||||| ||||||||||| | || | | ||||||||||
Sbjct 3960 GAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTG 3901
Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152
||| || |||| ||| | | | ||||| || || || |||| || ||||| |
Sbjct 3900 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTTATGGTCT 3842
Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
| |||||||| || || || ||||| ||||||||
Sbjct 3841 TACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 3808
>seq8351
Length=11701
Score = 118 bits (130), Expect = 1e-21
Identities = 156/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
||||| |||| || |||||| || || ||||| || |||| |||||| |||| ||
Sbjct 2864 CACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTCCGGCCGTCCTC 2805
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
|||||||| || ||||| ||||| ||||||||||| | || | | ||||||||||
Sbjct 2804 GAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTG 2745
Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152
||| || |||| ||| | | | ||||| || || || |||| || ||||| |
Sbjct 2744 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTTATGGTCT 2686
Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
| |||||||| || || || ||||| ||||||||
Sbjct 2685 TACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2652
>seq26701
Length=70828
Score = 102 bits (112), Expect = 9e-17
Identities = 142/195 (73%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| ||||||||||| |||||||| || || | || || ||||| || ||||| ||
Sbjct 32923 TCCTTCTGAATATTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAG 32864
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111
|| || | |||||| || | || | | ||||||| | ||| | || | ||||| |
Sbjct 32863 ATCAGCCTCTGCTGATCCGGTGGGATCCCTTCCTTGT-CTTGAATCTTGGCTTTGACATT 32805
Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168
| | ||||| ||| |||||| |||| ||||||||| ||||| || || |||||
Sbjct 32804 GTCAATGGTGTCAGAGCT---TTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGGGTCTT 32748
Query 43169 TACAAAGATTTGCAT 43183
|||||||| |||||
Sbjct 32747 AACAAAGATCTGCAT 32733
>seq7849
Length=122270
Score = 98.7 bits (108), Expect = 1e-15
Identities = 156/220 (71%), Gaps = 8/220 (4%)
Strand=Plus/Plus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| ||||||||| | || |||||| || || ||||| || |||||||||||| |
Sbjct 79484 CGCAGCACCAAATGTAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCCAGAGTCCGCCCA 79543
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || | ||||| || ||||| || || | ||| || || | || | | ||| ||
Sbjct 79544 TCCTCCAATTGCTTCCCTGCGAAGATCAGCCTCTGTTGATCCGGTGGAATCCCCTCTTTA 79603
Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 43144
||| ||| | |||| || | | | | ||| || |||| || || |||| |||
Sbjct 79604 TCC-TGAATCTTTGCCTTCACGTTATCAATCGTATCAGAGCTC---TCAACCTCGAGCGT 79659
Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184
||| || ||||| ||||| || || |||||||||||||||
Sbjct 79660 GATTGTCTTGCCGGTTAGGGTTTTGACAAAGATTTGCATT 79699
>seq5804
Length=153150
Score = 91.5 bits (100), Expect = 2e-13
Identities = 161/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| || || | ||| | |||||| || | || || || || |||||||| || |||
Sbjct 33016 CCACCCCTGAGACGGAGCACCAAGTGGAGGGTCGATTCTTTCTGTATATTGTAGTCGGCC 32957
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || ||| | || || | ||||| || || || ||||| | ||||||||| | ||
Sbjct 32956 AGGGTGCGCCCATCCTCCAATTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 32897
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTC---GCTCGATTC 43132
| || |||||||||| ||| || |||| ||| | | | ||||| |||| ||
Sbjct 32896 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGCTC---TC 32841
Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| |||| || || || ||||| || || ||||| || |||||||||||
Sbjct 32840 AACCTCGAGGGTAATAGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 32790
>seq2905
Length=56485
Score = 91.5 bits (100), Expect = 2e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
|||||| || | || |||||| || || ||||| || || || || || |||| ||
Sbjct 52744 CACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTC 52685
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
||||| || || ||||| || || ||||||||||| | || | || ||||||| | |
Sbjct 52684 CAGCTGTTTTCCGGCGAAGATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTGT-CTT 52626
Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152
|| | |||| |||| | | | |||||| ||||| || || | || || || |
Sbjct 52625 GAATCTTTGCCTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCTAGGGTAATAGTCT 52566
Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
| |||||||| || || || ||||| ||||| ||
Sbjct 52565 TCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 52532
>seq22277
Length=3790
Score = 87.8 bits (96), Expect = 2e-12
Identities = 137/195 (70%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || || || || || |||| || |||||||| || || ||
Sbjct 1495 CTCCTTCTGGATGTTGTAGTCTGCTAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAA 1436
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || || |||||||| | || | | ||||||||| ||| || |||| |
Sbjct 1435 GATCAGCCGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 1376
Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168
| | ||||| ||| ||| || || | ||||||||||| ||||| || |||||
Sbjct 1375 ATCAATGGTGTCAGAGCT---TTCGACTTCTAGGGTGATGGTTTTTCCCGTGAGGGTCTT 1319
Query 43169 TACAAAGATTTGCAT 43183
|||||||| |||||
Sbjct 1318 CACAAAGATCTGCAT 1304
>seq21627
Length=4779
Score = 87.8 bits (96), Expect = 2e-12
Identities = 137/195 (70%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || || || || || |||| || |||||||| || || ||
Sbjct 3287 CTCCTTCTGGATGTTGTAGTCTGCTAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAA 3346
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || || |||||||| | || | | ||||||||| ||| || |||| |
Sbjct 3347 GATCAGCCGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 3406
Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168
| | ||||| ||| ||| || || | ||||||||||| ||||| || |||||
Sbjct 3407 ATCAATGGTGTCAGAGCT---TTCGACTTCTAGGGTGATGGTTTTTCCCGTGAGGGTCTT 3463
Query 43169 TACAAAGATTTGCAT 43183
|||||||| |||||
Sbjct 3464 CACAAAGATCTGCAT 3478
>seq892
Length=123481
Score = 86.0 bits (94), Expect = 7e-12
Identities = 136/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || || || || || |||| || ||||| || || |||||
Sbjct 88292 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCCAGCTGTTTTCCGGCGAA 88351
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||| | || | || ||| ||||| ||| || |||| |
Sbjct 88352 GATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATT 88411
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | ||||| ||||| || || | || ||||| || |||||||| || || ||
Sbjct 88412 GTCGATGGTGTCAGATGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCAC 88471
Query 43172 AAAGATTTGCATTTT 43186
||||| ||||| ||
Sbjct 88472 GAAGATCTGCATCTT 88486
>seq12303
Length=64598
Score = 84.2 bits (92), Expect = 3e-11
Identities = 138/195 (71%), Gaps = 8/195 (4%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| ||||| || || || |||| || ||| | || || | |||||| ||||| ||
Sbjct 10862 TCCTTCTGAATGTTATAGTCGGCCAAGGTACGCCCATCCTCCAACTGCTTCCCAGCAAAG 10921
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 43111
|| | | ||||||||| | || | | |||||| || ||| | |||| |||| |
Sbjct 10922 ATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTATCT-TGAATCTTTGCCTTGACATT 10980
Query 43112 CGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168
| | |||||| ||| ||||| |||| |||||||||||||| || || |||||
Sbjct 10981 ATCGATGGTGTCGGAGCTC---TCCACCTCGAGAGTGATGGTTTTGCCGGTAAGGGTCTT 11037
Query 43169 TACAAAGATTTGCAT 43183
|| ||||| |||||
Sbjct 11038 CACGAAGATCTGCAT 11052
>seq11833
Length=9351
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/83 (83%), Gaps = 1/83 (1%)
Strand=Plus/Plus
Query 42994 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| |||||||||||||| || |||||||| |||| || ||||| || || ||||||
Sbjct 4328 CCTTTCTGAATATTGTAATCGGCGAGAGTCCGGCCGTCTTCGAGCTGTTTTCCGGCGAAT 4387
Query 43053 ATGAGTCGCTGCTGGTCGGCCGG 43075
|| || ||||||||||| | |||
Sbjct 4388 ATCAGCCGCTGCTGGTCCGGCGG 4410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571626605773880
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