Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq17719 127 2e-24 seq19972 118 1e-21 seq8351 118 1e-21 seq26701 102 9e-17 seq7849 98.7 1e-15 seq5804 91.5 2e-13 seq2905 91.5 2e-13 seq22277 87.8 2e-12 seq21627 87.8 2e-12 seq892 86.0 7e-12 seq12303 84.2 3e-11 seq11833 84.2 3e-11 >seq17719 Length=101630 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| |||| || |||||| || || |||||||| |||| |||||| |||| || Sbjct 79438 CACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTCCGGCCGTCCTC 79379 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| ||||| ||||||||||| | ||| | | |||||||||| Sbjct 79378 GAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTG 79319 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 ||| || |||| ||| | | | ||||| || || || |||| || ||||| | Sbjct 79318 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTTATGGTCT 79260 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 | |||||||| || || || ||||| |||||||| Sbjct 79259 TACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 79226 >seq19972 Length=4408 Score = 118 bits (130), Expect = 1e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| |||| || |||||| || || ||||| || |||| |||||| |||| || Sbjct 4020 CACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTCCGGCCGTCCTC 3961 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| ||||| ||||||||||| | || | | |||||||||| Sbjct 3960 GAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTG 3901 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 ||| || |||| ||| | | | ||||| || || || |||| || ||||| | Sbjct 3900 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTTATGGTCT 3842 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 | |||||||| || || || ||||| |||||||| Sbjct 3841 TACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 3808 >seq8351 Length=11701 Score = 118 bits (130), Expect = 1e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| |||| || |||||| || || ||||| || |||| |||||| |||| || Sbjct 2864 CACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTCCGGCCGTCCTC 2805 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| ||||| ||||||||||| | || | | |||||||||| Sbjct 2804 GAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTG 2745 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 ||| || |||| ||| | | | ||||| || || || |||| || ||||| | Sbjct 2744 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTTATGGTCT 2686 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 | |||||||| || || || ||||| |||||||| Sbjct 2685 TACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2652 >seq26701 Length=70828 Score = 102 bits (112), Expect = 9e-17 Identities = 142/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||||||||| |||||||| || || | || || ||||| || ||||| || Sbjct 32923 TCCTTCTGAATATTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAG 32864 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || || | |||||| || | || | | ||||||| | ||| | || | ||||| | Sbjct 32863 ATCAGCCTCTGCTGATCCGGTGGGATCCCTTCCTTGT-CTTGAATCTTGGCTTTGACATT 32805 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| ||| |||||| |||| ||||||||| ||||| || || ||||| Sbjct 32804 GTCAATGGTGTCAGAGCT---TTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGGGTCTT 32748 Query 43169 TACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 32747 AACAAAGATCTGCAT 32733 >seq7849 Length=122270 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||||||| | || |||||| || || ||||| || |||||||||||| | Sbjct 79484 CGCAGCACCAAATGTAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCCAGAGTCCGCCCA 79543 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || | ||||| || ||||| || || | ||| || || | || | | ||| || Sbjct 79544 TCCTCCAATTGCTTCCCTGCGAAGATCAGCCTCTGTTGATCCGGTGGAATCCCCTCTTTA 79603 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 ||| ||| | |||| || | | | | ||| || |||| || || |||| ||| Sbjct 79604 TCC-TGAATCTTTGCCTTCACGTTATCAATCGTATCAGAGCTC---TCAACCTCGAGCGT 79659 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 ||| || ||||| ||||| || || ||||||||||||||| Sbjct 79660 GATTGTCTTGCCGGTTAGGGTTTTGACAAAGATTTGCATT 79699 >seq5804 Length=153150 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||| | |||||| || | || || || || |||||||| || ||| Sbjct 33016 CCACCCCTGAGACGGAGCACCAAGTGGAGGGTCGATTCTTTCTGTATATTGTAGTCGGCC 32957 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || | ||||| || || || ||||| | ||||||||| | || Sbjct 32956 AGGGTGCGCCCATCCTCCAATTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 32897 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTC---GCTCGATTC 43132 | || |||||||||| ||| || |||| ||| | | | ||||| |||| || Sbjct 32896 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGCTC---TC 32841 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| || || || ||||| || || ||||| || ||||||||||| Sbjct 32840 AACCTCGAGGGTAATAGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 32790 >seq2905 Length=56485 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | || |||||| || || ||||| || || || || || |||| || Sbjct 52744 CACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTC 52685 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||| || || ||||| || || ||||||||||| | || | || ||||||| | | Sbjct 52684 CAGCTGTTTTCCGGCGAAGATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTGT-CTT 52626 Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 || | |||| |||| | | | |||||| ||||| || || | || || || | Sbjct 52625 GAATCTTTGCCTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCTAGGGTAATAGTCT 52566 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 | |||||||| || || || ||||| ||||| || Sbjct 52565 TCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 52532 >seq22277 Length=3790 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || |||||||| || || || Sbjct 1495 CTCCTTCTGGATGTTGTAGTCTGCTAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAA 1436 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || || |||||||| | || | | ||||||||| ||| || |||| | Sbjct 1435 GATCAGCCGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 1376 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| ||| ||| || || | ||||||||||| ||||| || ||||| Sbjct 1375 ATCAATGGTGTCAGAGCT---TTCGACTTCTAGGGTGATGGTTTTTCCCGTGAGGGTCTT 1319 Query 43169 TACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 1318 CACAAAGATCTGCAT 1304 >seq21627 Length=4779 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || |||||||| || || || Sbjct 3287 CTCCTTCTGGATGTTGTAGTCTGCTAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAA 3346 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || || |||||||| | || | | ||||||||| ||| || |||| | Sbjct 3347 GATCAGCCGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 3406 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| ||| ||| || || | ||||||||||| ||||| || ||||| Sbjct 3407 ATCAATGGTGTCAGAGCT---TTCGACTTCTAGGGTGATGGTTTTTCCCGTGAGGGTCTT 3463 Query 43169 TACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 3464 CACAAAGATCTGCAT 3478 >seq892 Length=123481 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || ||||| || || ||||| Sbjct 88292 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCCAGCTGTTTTCCGGCGAA 88351 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || ||| ||||| ||| || |||| | Sbjct 88352 GATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATT 88411 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| ||||| || || | || ||||| || |||||||| || || || Sbjct 88412 GTCGATGGTGTCAGATGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCAC 88471 Query 43172 AAAGATTTGCATTTT 43186 ||||| ||||| || Sbjct 88472 GAAGATCTGCATCTT 88486 >seq12303 Length=64598 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| || || || |||| || ||| | || || | |||||| ||||| || Sbjct 10862 TCCTTCTGAATGTTATAGTCGGCCAAGGTACGCCCATCCTCCAACTGCTTCCCAGCAAAG 10921 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 43111 || | | ||||||||| | || | | |||||| || ||| | |||| |||| | Sbjct 10922 ATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTATCT-TGAATCTTTGCCTTGACATT 10980 Query 43112 CGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | |||||| ||| ||||| |||| |||||||||||||| || || ||||| Sbjct 10981 ATCGATGGTGTCGGAGCTC---TCCACCTCGAGAGTGATGGTTTTGCCGGTAAGGGTCTT 11037 Query 43169 TACAAAGATTTGCAT 43183 || ||||| ||||| Sbjct 11038 CACGAAGATCTGCAT 11052 >seq11833 Length=9351 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 42994 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| |||||||||||||| || |||||||| |||| || ||||| || || |||||| Sbjct 4328 CCTTTCTGAATATTGTAATCGGCGAGAGTCCGGCCGTCTTCGAGCTGTTTTCCGGCGAAT 4387 Query 43053 ATGAGTCGCTGCTGGTCGGCCGG 43075 || || ||||||||||| | ||| Sbjct 4388 ATCAGCCGCTGCTGGTCCGGCGG 4410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571626605773880