Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq15657 91.5 1e-13 seq20716 87.8 1e-12 seq1735 87.8 1e-12 seq19122 84.2 2e-11 seq15652 82.4 6e-11 >seq15657 Length=83188 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||| ||||| | ||||| || |||||||||||||| || || ||||| ||| Sbjct 65943 CAGTTTTATGTTGCCGACGGGGAATTATCATGTCAAATGTATCAGCGCTCTGCTGACATG 66002 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||||||||| || || || ||| |||||| || | || | |||||||| ||| Sbjct 66003 GGTCTGGGTGTTCCATTTAACATCGCATCTTATGCCCTATTGACATGCATGATTGCTCAT 66062 Query 20551 GTT 20553 ||| Sbjct 66063 GTT 66065 >seq20716 Length=3912 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || |||||||| || || || || ||||||||||||| | || ||||| ||| Sbjct 3340 CAGTTCTACGTTGCCGATGGGGAGTTATCACGTCAAATGTATCAGTGCTCTGCTGACATG 3281 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||||||||| || || |||||| |||||| || ||| | |||||||| ||| Sbjct 3280 GGTCTGGGTGTTCCATTTAACATTGCATCTTATGCCCTATTTAAATGCATGATTGCTCAT 3221 Query 20551 GTT 20553 ||| Sbjct 3220 GTT 3218 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || ||||| || || || || |||||||||||||| || || ||||| ||| Sbjct 2284 CAGTTCTATGTTGCCGATGGGGAGTTATCATGTCAAATGTATCAGCGCTCTGCTGACATG 2225 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||| ||||||| || || || ||| |||||| || | || | |||||||| ||| Sbjct 2224 GGTCTGCGTGTTCCATTTAACATCGCATCTTATGCCCTATTGACATTAATGATTGCTCAT 2165 Query 20551 GTT 20553 ||| Sbjct 2164 GTT 2162 >seq1735 Length=24823 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || ||||| || | || || || |||||||||||||| || || ||||| ||| Sbjct 6664 CAGTTCTATGTTGCCAACAGAGAGTTATCATGTCAAATGTATCAGCGCTCTGCTGACATG 6723 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || || ||||| || || || ||||| |||||| || | |||| |||||||| ||| Sbjct 6724 GGTCTAGGTGTCCCGTTTAACATTGCTTCTTATGCCCTCTTGACGTGCATGATTGCTCAT 6783 Query 20551 GTT 20553 ||| Sbjct 6784 GTT 6786 >seq19122 Length=27991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 20455 TTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATT 20514 || || |||||||||||||| || || ||||| ||||| |||| |||||| || || ||| Sbjct 21986 TTATCATGTCAAATGTATCAGCGCTCTGCTGACATGGGTCTGGTTGTTCCATTTAACATT 22045 Query 20515 GCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTT 20553 ||| |||||| || | || | |||||||| |||||| Sbjct 22046 GCATCTTATGCCCTATTGACATGCATGATTGCTCATGTT 22084 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || ||||| || || || || |||||||||||||| || || ||||| ||| Sbjct 2680 CAGTTCTATGTTGCCGATGGGGAGTTATCATGTCAAATGTATCAGCGCTCTGCTGACATG 2739 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||| ||||||| || || || ||| |||||| || | || | |||||||| ||| Sbjct 2740 GGTCTGCGTGTTCCATTTAACATCGCATCTTATGCCCTATTGACATTCATGATTGCTCAT 2799 Query 20551 GTT 20553 ||| Sbjct 2800 GTT 2802 >seq15652 Length=12745 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||| ||||| || | || || |||||||||||||| || || ||||| ||| Sbjct 634 CAGTTTTATGTTGCCGATGGGGTGTTATCATGTCAAATGTATCAGCGCTCTGCTGACATG 693 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||||||||| || || || ||| || ||| || | || | |||||||| ||| Sbjct 694 GGTCTGGGTGTTCCATTTAACATCGCATCTTGTGCCCTATTGACATGCATGATTGCTCAT 753 Query 20551 GTT 20553 ||| Sbjct 754 GTT 756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399054000865345