Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq19262 91.5 1e-13
seq9252 91.5 1e-13
seq4573 86.0 5e-12
>seq19262
Length=114341
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| |||| || || | |||| |||||||||||| || || || ||||||||||| ||
Sbjct 46518 TCCACCCCTAAGCCTCAAAACCAGGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCTGC 46577
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
|| ||| | |||||||||||||||||| ||| | || | || |||||||| ||
Sbjct 46578 CAGAGTTCGGCCATCTTCCAATTGTTTGCCGGCAAAAATCAACCTCTGTTGATCAGGCGG 46637
Query 18218 CACGCCTTCCTTATC 18232
| |||||||| ||
Sbjct 46638 GATACCTTCCTTGTC 46652
>seq9252
Length=190322
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| || |||| || |||| ||| || |||||||| || || |||||||||||||||
Sbjct 60280 CCTCCGCGAAGTCGTAGCACCAGGTGGAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCC 60221
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| | ||||| | |||||| || || |||| || | |||||| ||| ||
Sbjct 60220 AGGGTTCGGCCGTCTTCTAGTTGTTTTCCGGCGAAGATCAGGCGTTGTTGGTCCGGAGGT 60161
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||| || || || ||| | |||||| | | | ||||| || ||||
Sbjct 60160 ATGCCCTCTTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACC 60101
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|| | ||| || | || ||||| || ||||| || || || ||||| ||
Sbjct 60100 TCTAGGGTTATCGTCTTCCCGGTTAAGGTTTTCACGAAGATCTGCATCTT 60051
>seq4573
Length=120409
Score = 86.0 bits (94), Expect = 5e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| |||| || || | |||| |||||||||||| || || || || |||||||| ||
Sbjct 8034 TCCACCCCTAAGCCTCAAAACCAGGTGAAGTGTTGACTCCTTCTGGATATTGTAGTCTGC 7975
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
|| ||| | |||||||||||||||||| ||| | || | || |||||||| ||
Sbjct 7974 CAGAGTTCGGCCATCTTCCAATTGTTTGCCGGCAAATATCAACCTCTGTTGATCAGGTGG 7915
Query 18218 CACGCCTTCCTTATC 18232
| |||||||| ||
Sbjct 7914 GATACCTTCCTTGTC 7900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379220462003145
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |