Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq19262 91.5 1e-13 seq9252 91.5 1e-13 seq4573 86.0 5e-12 >seq19262 Length=114341 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || || | |||| |||||||||||| || || || ||||||||||| || Sbjct 46518 TCCACCCCTAAGCCTCAAAACCAGGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCTGC 46577 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | |||||||||||||||||| ||| | || | || |||||||| || Sbjct 46578 CAGAGTTCGGCCATCTTCCAATTGTTTGCCGGCAAAAATCAACCTCTGTTGATCAGGCGG 46637 Query 18218 CACGCCTTCCTTATC 18232 | |||||||| || Sbjct 46638 GATACCTTCCTTGTC 46652 >seq9252 Length=190322 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || |||| || |||| ||| || |||||||| || || ||||||||||||||| Sbjct 60280 CCTCCGCGAAGTCGTAGCACCAGGTGGAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCC 60221 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||||| | |||||| || || |||| || | |||||| ||| || Sbjct 60220 AGGGTTCGGCCGTCTTCTAGTTGTTTTCCGGCGAAGATCAGGCGTTGTTGGTCCGGAGGT 60161 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| || || || ||| | |||||| | | | ||||| || |||| Sbjct 60160 ATGCCCTCTTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACC 60101 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | ||| || | || ||||| || ||||| || || || ||||| || Sbjct 60100 TCTAGGGTTATCGTCTTCCCGGTTAAGGTTTTCACGAAGATCTGCATCTT 60051 >seq4573 Length=120409 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || || | |||| |||||||||||| || || || || |||||||| || Sbjct 8034 TCCACCCCTAAGCCTCAAAACCAGGTGAAGTGTTGACTCCTTCTGGATATTGTAGTCTGC 7975 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | |||||||||||||||||| ||| | || | || |||||||| || Sbjct 7974 CAGAGTTCGGCCATCTTCCAATTGTTTGCCGGCAAATATCAACCTCTGTTGATCAGGTGG 7915 Query 18218 CACGCCTTCCTTATC 18232 | |||||||| || Sbjct 7914 GATACCTTCCTTGTC 7900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379220462003145