Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6526 132 6e-26 seq8535 129 7e-25 seq3997 111 2e-19 seq6300 87.8 2e-12 >seq6526 Length=28452 Score = 132 bits (146), Expect = 6e-26 Identities = 402/614 (65%), Gaps = 13/614 (2%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 ||| || |||||||||||||||| |||||||||| || | ||||| || || || Sbjct 21886 CAAGCACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGT 21945 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 ||| || ||||||| || |||||||| ||||||||||| | ||| |||||| || Sbjct 21946 GAGACCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAA 22005 Query 33698 GAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TC 33754 |||||| || || | ||| || || || || ||||| || | | || ||| | Sbjct 22006 GAAGATCCCCTCGA-AGCACGCGAACGCGATGAGTCTTTCGGC--GAACGATTCTGAACC 22062 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 | ||||| || ||||| | |||||| |||| || ||||| || || || || || Sbjct 22063 GTCGATCCATTTCAACGCCCACTTGGCCTTTTTTTCCACGCAAGGGATGGTCTCGATCGC 22122 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 | ||||| || || || || | | || | |||| || || || || Sbjct 22123 GTGGAAGAGGCGGTCCTTCTCGGCCGGGTCCCTGATGTAGGATTCGAGCAGGAGGCTGTA 22182 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 |||||| || || ||||| || ||||| || || || |||||||| | || |||| Sbjct 22183 CATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCCCGCGCTTCGGC 22242 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 || || || || | || || | || | || || || || || || ||| Sbjct 22243 AACTTGTACCTCCTTCATGAAACGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGC 22302 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATT 34051 || || || || | || ||||| || || | || ||||| | || || | | Sbjct 22303 GGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCGTC 22362 Query 34052 CCAAT--CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 ||| | | ||| || | || | |||||| || ||| | ||||| ||||| || || Sbjct 22363 CCAGTGGCGTTG--GTCCTGCGACAGATCCACCTCCTCCGCCGTCCAGAATGACGCTTCA 22420 Query 34110 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTT 34169 ||||| || ||||| | |||||| | | || ||||| ||||| || |||| | | Sbjct 22421 GCCTTCTTGTACATCTCCCAGATCTGCGGGTACTGGATCGGGAACATGCAGAATCGGTCT 22480 Query 34170 GGATTTGGTGCAAG 34183 || ||||| ||||| Sbjct 22481 GGGTTTGGGGCAAG 22494 >seq8535 Length=22056 Score = 129 bits (142), Expect = 7e-25 Identities = 399/610 (65%), Gaps = 13/610 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || |||||||||||||||| |||||||||| || | ||||| || || ||||| Sbjct 6596 CACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAGA 6655 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||||| || |||||||| ||||||||||| | ||| |||||| |||||| Sbjct 6656 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAG 6715 Query 33702 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TCATGT 33758 || || || || ||| || || || || || || || | | || ||| | | Sbjct 6716 ATCCCCTCCAC-GCACGCGAATGCGATGAGCCTTTCGGC--GAACGATTCTGAACCGTCG 6772 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 |||||||| ||||| | ||||| |||| || ||||| | || || || || | Sbjct 6773 ATCCACTTCAACGCCCACTTTGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGTGG 6832 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 ||||| ||| || || || || | || | |||| || || || |||||| Sbjct 6833 AAGAGGCGGTTCTTCTCGGCCGAGTCCTTGATGTAGGATTCGAGCAGGAGGCTGTACATT 6892 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || || ||||| || ||||| || || || |||||||| | || |||| | Sbjct 6893 TCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCTTCGGCGACT 6952 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || || || | ||||| | || | || || || || ||||| ||| || Sbjct 6953 TGTACCTCCTTCATGAATCGGCCAGCGAGGTTCTCGAGGACGATGCCATCTGAGGCGGCG 7012 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTCCAA 34055 || || || | || || | || || | || ||||| | || || | || ||| Sbjct 7013 AAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCATCCCAG 7072 Query 34056 T--CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | | ||| || | || | ||||||||| ||| | ||||| || || || || |||| Sbjct 7073 TGGCGTTG--GTCCTGCGACAGATCCACTTCCTCCGCCGTCCAGAACGACGCTTCGGCCT 7130 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 34173 | || ||||| | |||||| | | || || || ||||| || |||| || ||| | Sbjct 7131 TCTTGTACATCTCCCAGATCTGCGGGTACTGAATCGGGAACATGCAGAATCGATCTGGGT 7190 Query 34174 TTGGTGCAAG 34183 |||| || || Sbjct 7191 TTGGGGCGAG 7200 >seq3997 Length=108068 Score = 111 bits (122), Expect = 2e-19 Identities = 385/594 (65%), Gaps = 19/594 (3%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || ||||| |||||||| || |||||||||| |||| ||||| || | Sbjct 89774 ACAGCAAGCACGCGAAGTCGCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAGA 89833 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || ||||| ||||||| || ||||| || ||||||||||| | ||| ||||| Sbjct 89834 AAGTCAGTCCCGGCATTAACCCGCGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCGG 89893 Query 33694 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAAC----CGGC 33748 | |||||||| || || || ||| || || || | || | ||| | ||| | | Sbjct 89894 AGAAGAAGATCCCCTCCAC-GCACGCGAACGCCACGAGACGCTCGGC-GAACGATTCTGA 89951 Query 33749 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 || ||| ||||| || | ||||| | ||||||||| || ||||| || || || Sbjct 89952 GCCGTC---GATCCATTTCAGGGCCCACTTGGCCTTCTTCACCACGCAAGGGATGGTCTC 90008 Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33868 || || | ||||| || || || || || | || | |||| | || Sbjct 90009 GATTGCGTGGAAGAGGCGGTGCTTCTCGGAGGAGTCCTTGATGTAGGATTCGAGGAGGAG 90068 Query 33869 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33928 || ||||| || || || ||||| || || || ||||| || || |||||| | || Sbjct 90069 GCTGTACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCCATAGAAAGCGCGGGC 90128 Query 33929 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATC 33988 ||| | | ||| || || | || || | || | ||| || || || || || Sbjct 90129 CTCAGCGACCTGGACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGAGGACGATGCCGTC 90188 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA--GT 34046 |||||| || || || | || || || || | | ||||| | |||| || Sbjct 90189 GGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGCCTCTCGTCGGCGGTTAGGGT 90248 Query 34047 TTATTCCAATCATTG----ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 34102 || ||| || || | || || | ||||| || ||| | ||||| || || Sbjct 90249 TTGGTCC---CAGTGGCGAAGGTCAGCGGAGAGGTCCACCTCCTCCGCCGTCCAGAACGA 90305 Query 34103 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 ||||||||||| || ||||| | |||||| | | || ||||| ||||| || Sbjct 90306 CGCCTCTGCCTTCTTGTACATCTCCCAGATCTACGGGTACTGGATCGGGAACAT 90359 >seq6300 Length=25064 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || |||||||| | ||||| || || || || |||||| | | ||| | | || Sbjct 13733 GTCCCTGCATTAAAAAGAGTAGGTGATGCATGAGTGAACCATCTCTGAGACATCAAATGA 13792 Query 63723 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | ||| | || | ||||| | ||| || || || || || || | ||| || Sbjct 13793 TAAGTTTTGATAACAGAATAGATATCATCCTTG-TGGATCCCAACAGCAACCCTCATCAA 13851 Query 63782 CATGTGCTGAGGTCTTTCAACAA--TTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 |||||| ||||| |||||||||| ||| |||| | |||||||||||| || | || Sbjct 13852 CATGTGTTGAGGCCTTTCAACAACCTTTCCTTGT--ACTTTCAACAAGTAAGACCTCTCA 13909 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 | || || || ||||| || | || ||||||||| || || || || Sbjct 13910 AGTGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAGATTAT 13959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629607233048880