Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6526 120 4e-22 seq8535 114 2e-20 seq10 102 1e-16 seq6300 98.7 1e-15 seq3997 93.3 6e-14 seq15419 86.0 8e-12 >seq6526 Length=28452 Score = 120 bits (132), Expect = 4e-22 Identities = 370/565 (65%), Gaps = 17/565 (3%) Strand=Plus/Plus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 ||| || |||||||||||||| | |||||||||| || | ||||| || || || Sbjct 21886 CAAGCACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGT 21945 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 36272 ||| || ||||||| || |||||||| ||||||||||| | |||| || ||| || | Sbjct 21946 GAGACCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGA 22004 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCACTG 36328 |||| || || || | ||| || || || ||||| || | ||| | | || | Sbjct 22005 AGAAGATCCCCTCGAAGCACGCGAACGCGATGAGTCTTTCGGC-GAACGATTCTGAACCG 22063 Query 36329 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 || ||||| || ||||| | |||||| |||| || ||||| || ||||| || Sbjct 22064 TC---GATCCATTTCAACGCCCACTTGGCCTTTTTTTCCACGCAAGGGATGGTCTCGATC 22120 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 || | ||||| || || || || | | || | || | || || || Sbjct 22121 GCGTGGAAGAGGCGGTCCTTCTCGGCCGGGTCCCTGATGTAGGATTCGAGCAGGAGGCTG 22180 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 |||||||| || || ||||| || ||||| ||||| || |||||||| | || ||| Sbjct 22181 TACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCCCGCGCTTCG 22240 Query 36509 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 36568 | || ||||| || | || || | || | || || || || ||||| | Sbjct 22241 GCAACTTGTACCTCCTTCATGAAACGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAG 22300 Query 36569 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAG---TTTA 36625 || || || || || | || ||||| || || | || |||| | || || | Sbjct 22301 GCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCG 22360 Query 36626 TTCCAAT--CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 36683 | ||| | | ||| || | || | |||||| || ||| | ||||| ||||| || | Sbjct 22361 TCCCAGTGGCGTTG--GTCCTGCGACAGATCCACCTCCTCCGCCGTCCAGAATGACGCTT 22418 Query 36684 CTGCCTTTTTATACATATTCCAGAT 36708 | ||||| || ||||| | |||||| Sbjct 22419 CAGCCTTCTTGTACATCTCCCAGAT 22443 >seq8535 Length=22056 Score = 114 bits (126), Expect = 2e-20 Identities = 381/585 (65%), Gaps = 17/585 (3%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || |||||||||||||| | |||||||||| || | ||||| || || ||||| Sbjct 6596 CACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAGA 6655 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 || ||||||| || |||||||| ||||||||||| | |||| || ||| || ||||| Sbjct 6656 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGAA 6714 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCACTGTCAT 36332 || || || || ||| || || || || || || | ||| | | || ||| Sbjct 6715 GATCCCCTCCACGCACGCGAATGCGATGAGCCTTTCGGC-GAACGATTCTGAACCGTC-- 6771 Query 36333 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 36392 |||||||| ||||| | ||||| |||| || ||||| | ||||| || || | Sbjct 6772 -GATCCACTTCAACGCCCACTTTGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGT 6830 Query 36393 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 36452 ||||| ||| || || || || | || | || | || || || |||| Sbjct 6831 GGAAGAGGCGGTTCTTCTCGGCCGAGTCCTTGATGTAGGATTCGAGCAGGAGGCTGTACA 6890 Query 36453 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 36512 |||| || || ||||| || ||||| ||||| || |||||||| | || |||| | Sbjct 6891 TTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCTTCGGCGA 6950 Query 36513 TCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 36572 ||||| || | ||||| | || | || || || || || || ||| | Sbjct 6951 CTTGTACCTCCTTCATGAATCGGCCAGCGAGGTTCTCGAGGACGATGCCATCTGAGGCGG 7010 Query 36573 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAG---TTTATTCC 36629 | || || || | || || | || || | || |||| | || || | || || Sbjct 7011 CGAAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCATCCC 7070 Query 36630 AAT--CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 36687 | | | ||| || | || | ||||||||| ||| | ||||| || || || || || Sbjct 7071 AGTGGCGTTG--GTCCTGCGACAGATCCACTTCCTCCGCCGTCCAGAACGACGCTTCGGC 7128 Query 36688 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 ||| || ||||| | |||||| | | || ||||| || || || Sbjct 7129 CTTCTTGTACATCTCCCAGATCTGCGGGTACTGAATCGGGAACAT 7173 >seq10 Length=262601 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || || ||||| | || | || |||| ||| |||||| | |||||||| || |||| Sbjct 128810 CCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACTCGAAGCATTGGAACAACACCA 128751 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 |||||||| ||||| || || ||||| || || | ||||| |||||| || || Sbjct 128750 TTGGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGGATATTATGAACAGAG 128691 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 ||||| ||||| || || ||| ||| | || || ||| || |||||||| || Sbjct 128690 AGACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAAGGTATCATATATT 128631 Query 66396 CCCTCTATACTATCATCCATCATG 66419 || || ||||| |||||| ||||| Sbjct 128630 CCTTCAATACTGTCATCCTTCATG 128607 >seq6300 Length=25064 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || || ||||| | || | || |||| |||| |||||| | |||||||| | |||| Sbjct 13282 CCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGAAGCATTGGAACCACACCA 13341 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 |||||||| ||||| || || |||||||| || | ||||| |||||| || || Sbjct 13342 TTGGATGTCCCATTTGTTCCACGAATATAGCTGCCGGTAGCACGGATATTATGAACAGAA 13401 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| ||||| || || |||| ||| | || || ||| || |||||||| || Sbjct 13402 ACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCTTTCAAGGTATCATATATT 13461 Query 66396 CCCTCTATACTATCATCCATCATG 66419 || || || || ||||| ||||| Sbjct 13462 CCTTCAATGCTGTCATCTTTCATG 13485 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || |||||||| | ||||| || || || || |||||| | | ||| | | || Sbjct 13733 GTCCCTGCATTAAAAAGAGTAGGTGATGCATGAGTGAACCATCTCTGAGACATCAAATGA 13792 Query 66516 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 66574 || || | ||| | || | ||||| | ||| || || || || || || | ||| || Sbjct 13793 TAAGTTTTGATAACAGAATAGATATCATCCTTG-TGGATCCCAACAGCAACCCTCATCAA 13851 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||| ||||| |||||||| | ||| | || |||||||||||| || | || | Sbjct 13852 CATGTGTTGAGGCCTTTCAACAACCTTTCCTTGTACTTTCAACAAGTAAGACCTCTCAAG 13911 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAt 66682 || || || ||||| || | || ||||||||| || || || || Sbjct 13912 TGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAGATTAT 13959 >seq3997 Length=108068 Score = 93.3 bits (102), Expect = 6e-14 Identities = 175/253 (69%), Gaps = 6/253 (2%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| ||| || ||||| |||||||| || |||||||||| |||| ||||| || | Sbjct 89774 ACAGCAAGCACGCGAAGTCGCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAGA 89833 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 36268 | || ||||| ||||||| || ||||| || ||||||||||| | |||| || ||| Sbjct 89834 AAGTCAGTCCCGGCATTAACCCGCGCTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCG 89892 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT- 36327 || ||||| || || || || ||| || || | || | ||| | | || || Sbjct 89893 GAGAAGAAGATCCCCTCCACGCACGCGAACGCCACGAGACGCTCGGC--GAACGATTCTG 89950 Query 36328 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386 | | | ||||| || | ||||| | ||||||||| || ||||| || ||||| | Sbjct 89951 AGCCGTCGATCCATTTCAGGGCCCACTTGGCCTTCTTCACCACGCAAGGGATGGTCTCGA 90010 Query 36387 TAGCATTAAAGAG 36399 | || | ||||| Sbjct 90011 TTGCGTGGAAGAG 90023 >seq15419 Length=18895 Score = 86.0 bits (94), Expect = 8e-12 Identities = 94/123 (76%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || ||||| ||||| |||||||| |||||| ||| | ||| || || || || | Sbjct 8786 CAAGCAAAATCACAGTGGAGACCCTCATCTCTAGAAATAAGTTCATTTGAGAATGTCAAG 8845 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT--CCAGAAAAGA 36275 || ||||| || || | ||||||||||||||| |||| |||||| | | |||||||| Sbjct 8846 CCCGGCATGAGTCCTCTCTTTTTAAGCCAAAAAATGG-CGCAAAAGCTGAGAAGAAAAGA 8904 Query 36276 AAA 36278 ||| Sbjct 8905 AAA 8907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657952962057640