Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq7849 114 1e-20 seq9252 105 7e-18 seq26701 102 8e-17 seq4434 91.5 1e-13 seq5804 87.8 2e-12 seq21627 86.0 6e-12 seq2938 84.2 2e-11 >seq7849 Length=122270 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | || | || | ||| | || ||||| || || |||||||| || Sbjct 81067 GCCGCCGCGGAGTCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCCGC 81126 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || ||||||||||| || || |||||||||| |||||||| ||||| Sbjct 81127 AAGAGTGCGGCCATCCTCGAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGATCCGGAGG 81186 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| |||||| ||| | | || | ||||||| | ||| || Sbjct 81187 AATGCCTTCTTTGTCCTGGATTTTGGCTTTGACGTTGTCGATCGTGTCGGAGCTCTCGAC 81246 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||||| | ||||| ||||| || ||||| Sbjct 81247 CTCGAGAGTTATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 81294 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | || | || | ||| | || ||||| || || |||||||| || Sbjct 80383 GCCGCCGCGGAGTCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCTGC 80442 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || ||||||||||| || || ||||||| || |||||||| ||||| Sbjct 80443 AAGAGTGCGGCCATCCTCGAGCTGTTTTCCTGCGAAGATCAGGCGCTGCTGATCCGGAGG 80502 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| ||| |||| | || | | || | ||| || | | ||| | Sbjct 80503 AATACCTTCCTTGTC-TTGAATTTTGGCCTTGACATTATCAATTGTATCTGAGCTCTCGA 80561 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | |||||||| || | ||||||||||| || ||||| Sbjct 80562 CCTCGAGCGTGATTGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCAT 80610 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | || | || | ||| | || ||||| || || |||||||| || Sbjct 80611 GCCGCCGCGGAGTCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCTGC 80670 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || ||||||||||| || || ||||||| || |||||||| ||||| Sbjct 80671 AAGAGTGCGGCCATCCTCGAGCTGTTTTCCTGCGAAGATCAGGCGCTGCTGATCCGGAGG 80730 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| ||| |||| | || | | || | ||| || | | ||| | Sbjct 80731 AATACCTTCCTTGTC-TTGAATTTTGGCCTTGACATTATCAATTGTATCTGAGCTCTCGA 80789 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | |||||||| || | ||||||||||| || ||||| Sbjct 80790 CCTCGAGCGTGATTGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCAT 80838 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | || | || | ||| | || ||||| || || |||||||| || Sbjct 80839 GCCGCCGCGGAGTCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCTGC 80898 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || ||||||||||| || || ||||||| || |||||||| ||||| Sbjct 80899 AAGAGTGCGGCCATCCTCGAGCTGTTTTCCTGCGAAGATCAGGCGCTGCTGATCCGGAGG 80958 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| ||| |||| | || | | || | ||| || | | ||| | Sbjct 80959 AATACCTTCCTTGTC-TTGAATTTTGGCCTTGACATTATCAATTGTATCTGAGCTCTCGA 81017 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | |||||||| || | ||||||||||| || ||||| Sbjct 81018 CCTCGAGCGTGATTGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCAT 81066 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||| ||||| || || | || | ||| ||||||||||| || Sbjct 80186 GTGGACTCCTTTTGGATGTTGTAGTCCGCAAGAGTACGGCCGTCCTCGAGCTGTTTTCCG 80245 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || ||||||| || |||||||| ||||| || ||||| ||||| ||| |||| | || Sbjct 80246 GCGAAGATCAGGCGCTGCTGATCCGGAGGAATACCTTCCTTGTC-TTGAATTTTGGCCTT 80304 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||| || | | ||| ||||| | || | |||||||| || | || Sbjct 80305 GACATTATCAATTGTATCTGAGCTCTCGACCTCGAGCGTGATTGTCTTGCCAGTTAGGGT 80364 Query 139747 TTTTACGAATATTTGCAT 139764 ||||||||| || ||||| Sbjct 80365 TTTTACGAAGATCTGCAT 80382 >seq9252 Length=190322 Score = 105 bits (116), Expect = 7e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||| | ||| || || || || ||||| || ||| || || | |||||| || || Sbjct 60257 GTGGAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTTCGGCCGTCTTCTAGTTG 60198 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||| || || ||||||| ||||| || || ||||||||||| |||||||| ||| | | Sbjct 60197 TTTTCCGGCGAAGATCAGGCGTTGTTGGTCCGGAGGTATGCCCTCTTTGTC-CTGAATCT 60139 Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | | || | | || | ||||||| || ||| ||||| | ||| | |||||| |||| Sbjct 60138 TGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCTAGGGTTATCGTCTTCCCGG 60079 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 | || ||||| ||||| || ||||| Sbjct 60078 TTAAGGTTTTCACGAAGATCTGCAT 60054 >seq26701 Length=70828 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 |||||||| || || ||||| || || ||| | |||| ||| |||||||| || || Sbjct 32245 GTAGACTCCTTCTGGATGTTGTAGTCTGCT-AGGGTGCGGCCGTCCTCGAGCTGCTTTCC 32187 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| ||||||| | |||||| || || || |||||||||||||| ||| ||| || Sbjct 32186 AGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTTGCCTT 32127 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | | |||||||| | ||| | ||||||||||| | || Sbjct 32126 GACATTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGT 32067 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 32066 CTTAACGAAGATCTGCAT 32049 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 || ||||| || || ||||| || || ||| | |||| ||| |||||||| || || Sbjct 32473 GTTGACTCCTTCTGGATGTTGTAGTCCGCT-AGGGTGCGGCCGTCCTCGAGCTGCTTTCC 32415 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| ||||||| | |||||| || || || ||||||||||| || ||| ||| || Sbjct 32414 AGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATGCCTTCTTTATCCTGGATCTTTGCCTT 32355 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| | |||||||| | ||| | |||||||| || | || Sbjct 32354 GACATTGTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGT 32295 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 32294 CTTAACGAAGATCTGCAT 32277 >seq4434 Length=125464 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || ||||||| || || || || ||||||||||| ||| || || | | Sbjct 10264 CGCAGCACCAAGTGAAGGGTCGATTCCTTCTGAATGTTATAGTCGGCCAAGGTACGCCCA 10323 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || | ||| || || ||| ||||||| | ||||| || || || || || |||||| Sbjct 10324 TCCTCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCCGGTGGAATTCCCTCTTTG 10383 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || ||| | | || | ||||||| | |||||||| | ||| | Sbjct 10384 TCCTGGATCTTGGCTTTGACATTGTCTATGGTGTCGGAGCTTTCCACCTCGAGGGTGATG 10443 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || | ||||| ||||| || ||||| Sbjct 10444 GTCTTGCCTGTGAGGGTTTTCACGAAGATCTGCAT 10478 >seq5804 Length=153150 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | || | ||| | || || ||||| |||||||| || ||| Sbjct 32561 GCCTCCTCTGAGACGGAGCACCAGGTGGAGGGTGGATTCTTTCTGAATGTTGTAGTCGGC 32502 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||| |||||||| || || ||| |||| || | |||||||| ||||| Sbjct 32501 GAGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGATCCGGAGG 32442 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | ||||||| | |||||| Sbjct 32441 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCAC 32382 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||| | ||||| || || || ||||| Sbjct 32381 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 32334 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || |||||||| ||||||||||||||| | Sbjct 33244 CCACCACGCAGACGAAGCACCAAGTGCAGGGTCGACTCTTTCTGAATGTTATAATCGGCC 33185 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| | || || | ||| || ||||| | |||| | ||||| || || || Sbjct 33184 AGGGTGCGCCCATCCTCCAACTGCTTCCCAGCGAAAATCAATCTCTGCTGGTCCGGTGGG 33125 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | ||||| | | ||||||| Sbjct 33124 ATTCCCTCCTTGTCTTGGATCTTCGCCTTGACTTTGTCGATGGTGTCCGAGCTCTCCACC 33065 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| ||||| | || || ||||| |||||||| Sbjct 33064 TCGAGGGTAATAGTCTTTCCGGTGAGGGTCTTGACGAAAATTTGCAT 33018 >seq21627 Length=4779 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | || | ||| || ||||| || || Sbjct 3510 GTCGACTCCTTCTGGATGTTGTAGTCGGCTAAAGTCCGGCCGTCCTCCAGCTGCTTTCCG 3569 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| |||||||| || || || || ||||||||||| ||| ||| || Sbjct 3570 GCAAAGATCAGCCGTTGCTGGTCCGGTGGGATTCCTTCTTTGTCCTGGATCTTTGCCTTG 3629 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | || ||||| | ||| | ||||||||| || | || Sbjct 3630 ACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATCGTCTTGCCAGTGAGGGTC 3689 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 3690 TTCACGAAGATCTGCAT 3706 >seq2938 Length=28785 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || || ||||| || || || || || | ||||| ||||| Sbjct 10709 ACCAAGTGGAGGGTCGATTCTTTCTGGATATTGTAGTCCGCGAGTGTGCGGCCATCTTCA 10650 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || ||||| |||| || | ||||| || ||||| ||||| |||||||| | Sbjct 10649 AGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGGATGCCCTCTTTGTCCTGG 10590 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | ||||||| | |||||||| | ||| | |||||| Sbjct 10589 ATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTCTTG 10530 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| || || ||||| || ||||| Sbjct 10529 CCGGTCAGGGTCTTGACGAAGATCTGCAT 10501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495898308423200