Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6526 127 3e-24 seq8535 120 4e-22 seq3997 113 6e-20 seq6300 102 1e-16 seq10 93.3 6e-14 seq15419 86.0 9e-12 >seq6526 Length=28452 Score = 127 bits (140), Expect = 3e-24 Identities = 402/614 (65%), Gaps = 13/614 (2%) Strand=Plus/Plus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 ||| || |||||||||||||||| |||||||||| || || ||||| || || || Sbjct 21886 CAAGCACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGT 21945 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAA 50074 ||| || ||||||| || |||||||| ||||||||||| | |||| || || || | Sbjct 21946 GAGACCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGA 22004 Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG--TC 50132 ||||||| || || | || || || | ||||| || | ||| | ||| | Sbjct 22005 AGAAGATCCCCTCGAAGCACGCGAACGCGATGAGTCTTTCGGC-GAAC-GATTCTGAACC 22062 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 | ||||| || ||||| | |||||| |||| || ||||| || || || || || Sbjct 22063 GTCGATCCATTTCAACGCCCACTTGGCCTTTTTTTCCACGCAAGGGATGGTCTCGATCGC 22122 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 | ||||| || || || || | | || | |||| || || || || Sbjct 22123 GTGGAAGAGGCGGTCCTTCTCGGCCGGGTCCCTGATGTAGGATTCGAGCAGGAGGCTGTA 22182 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 |||||| || || ||||| || ||||| || || || |||||||| | || |||| Sbjct 22183 CATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCCCGCGCTTCGGC 22242 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 || || || || | || || | || | || || || || ||||| ||| Sbjct 22243 AACTTGTACCTCCTTCATGAAACGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGC 22302 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG---TTTATT 50429 || || || || | || ||||| || || || || |||| || || || | | Sbjct 22303 GGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCGTC 22362 Query 50430 CCAAT--CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487 ||| | | ||| || | || | ||| || || ||| | ||||| ||||| || || Sbjct 22363 CCAGTGGCGTTG--GTCCTGCGACAGATCCACCTCCTCCGCCGTCCAGAATGACGCTTCA 22420 Query 50488 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTT 50547 ||||| || ||||| | |||||| | | || ||||| ||||| || |||| | | Sbjct 22421 GCCTTCTTGTACATCTCCCAGATCTGCGGGTACTGGATCGGGAACATGCAGAATCGGTCT 22480 Query 50548 GGATTTGGTGCAAG 50561 || ||||| ||||| Sbjct 22481 GGGTTTGGGGCAAG 22494 >seq8535 Length=22056 Score = 120 bits (132), Expect = 4e-22 Identities = 398/610 (65%), Gaps = 13/610 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || |||||||||||||||| |||||||||| || || ||||| || || ||||| Sbjct 6596 CACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAGA 6655 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||||| || |||||||| ||||||||||| | |||| || || || ||||| Sbjct 6656 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGAA 6714 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG--TCATGT 50136 ||| || || || || || || | || || || | ||| | ||| | | Sbjct 6715 GATCCCCTCCACGCACGCGAATGCGATGAGCCTTTCGGC-GAAC-GATTCTGAACCGTCG 6772 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||||| ||||| | ||||| |||| || ||||| | || || || || | Sbjct 6773 ATCCACTTCAACGCCCACTTTGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGTGG 6832 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 ||||| ||| || || || || | || | |||| || || || |||||| Sbjct 6833 AAGAGGCGGTTCTTCTCGGCCGAGTCCTTGATGTAGGATTCGAGCAGGAGGCTGTACATT 6892 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 || || || ||||| || ||||| || || || |||||||| | || |||| | Sbjct 6893 TCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCTTCGGCGACT 6952 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 || || || | ||||| |||| | || || || || || || ||| || Sbjct 6953 TGTACCTCCTTCATGAATCGGCCAGCGAGGTTCTCGAGGACGATGCCATCTGAGGCGGCG 7012 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG---TTTATTCCAA 50433 || || || | || || | || || || || |||| || || || | || ||| Sbjct 7013 AAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCATCCCAG 7072 Query 50434 T--CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 | | ||| || | || | ||| ||||| ||| | ||||| || || || || |||| Sbjct 7073 TGGCGTTG--GTCCTGCGACAGATCCACTTCCTCCGCCGTCCAGAACGACGCTTCGGCCT 7130 Query 50492 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 50551 | || ||||| | |||||| | | || || || ||||| || |||| || ||| | Sbjct 7131 TCTTGTACATCTCCCAGATCTGCGGGTACTGAATCGGGAACATGCAGAATCGATCTGGGT 7190 Query 50552 TTGGTGCAAG 50561 |||| || || Sbjct 7191 TTGGGGCGAG 7200 >seq3997 Length=108068 Score = 113 bits (124), Expect = 6e-20 Identities = 385/592 (65%), Gaps = 15/592 (3%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| ||| || ||||| |||||||| || |||||||||| ||||| ||||| || | Sbjct 89774 ACAGCAAGCACGCGAAGTCGCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAGA 89833 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | || ||||| ||||||| || ||||| || ||||||||||| | |||| || || Sbjct 89834 AAGTCAGTCCCGGCATTAACCCGCGCTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCG 89892 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT- 50129 || |||||||| || || || || || || || || | ||| | ||| | || Sbjct 89893 GAGAAGAAGATCCCCTCCACGCACGCGAACGCCACGAGACGCTCGGC-GAAC-GATTCTG 89950 Query 50130 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 | | | ||||| || | ||||| | ||||||||| || ||||| || || || | Sbjct 89951 AGCCGTCGATCCATTTCAGGGCCCACTTGGCCTTCTTCACCACGCAAGGGATGGTCTCGA 90010 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 | || | ||||| || || || || || | || | |||| | || | Sbjct 90011 TTGCGTGGAAGAGGCGGTGCTTCTCGGAGGAGTCCTTGATGTAGGATTCGAGGAGGAGGC 90070 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308 | ||||| || || || ||||| || || || ||||| || || |||||| | |||| Sbjct 90071 TGTACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCCATAGAAAGCGCGGGCCT 90130 Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368 | | | ||| || || | || || | || | ||| || || || ||||| Sbjct 90131 CAGCGACCTGGACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGAGGACGATGCCGTCGG 90190 Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA--GTTT 50426 |||||| || || || | || || || || || | |||| || |||| |||| Sbjct 90191 AGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGCCTCTCGTCGGCGGTTAGGGTTT 90250 Query 50427 ATTCCAATCATTG----ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 50482 ||| || || | || || | || || || ||| | ||||| || || | Sbjct 90251 GGTCC---CAGTGGCGAAGGTCAGCGGAGAGGTCCACCTCCTCCGCCGTCCAGAACGACG 90307 Query 50483 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 |||||||||| || ||||| | |||||| | | || ||||| ||||| || Sbjct 90308 CCTCTGCCTTCTTGTACATCTCCCAGATCTACGGGTACTGGATCGGGAACAT 90359 >seq6300 Length=25064 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || || ||||| | || | || |||| |||| |||||| | |||||||| | |||| Sbjct 13282 CCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGAAGCATTGGAACCACACCA 13341 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 |||||||| ||||| || || |||||||| || | ||||| |||||| || || Sbjct 13342 TTGGATGTCCCATTTGTTCCACGAATATAGCTGCCGGTAGCACGGATATTATGAACAGAA 13401 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| ||||| || || |||| ||| | || || ||| || |||||||| || Sbjct 13402 ACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCTTTCAAGGTATCATATATT 13461 Query 80275 CCCTCTATGCTATCATCAATCATG 80298 || || ||||| ||||| ||||| Sbjct 13462 CCTTCAATGCTGTCATCTTTCATG 13485 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || |||||||| | ||||| || || || || |||||| | | ||||| | || Sbjct 13733 GTCCCTGCATTAAAAAGAGTAGGTGATGCATGAGTGAACCATCTCTGAGACATCAAATGA 13792 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || | ||| | || | ||||| | ||| || || || || || || | ||| || Sbjct 13793 TAAGTTTTGATAACAGAATAGATATCATCCTTG-TGGATCCCAACAGCAACCCTCATCAA 13851 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||| ||||| |||||||| | ||| | || ||||||||||||||| | || | Sbjct 13852 CATGTGTTGAGGCCTTTCAACAACCTTTCCTTGTACTTTCAACAAGTAAGACCTCTCAAG 13911 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 || || || ||||| || | || ||||||||| || || || || Sbjct 13912 TGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAGATTAT 13959 >seq10 Length=262601 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || || ||||| | || | || |||| ||| |||||| | |||||||| || |||| Sbjct 128810 CCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACTCGAAGCATTGGAACAACACCA 128751 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 |||||||| ||||| || || ||||| || || | ||||| |||||| || || Sbjct 128750 TTGGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGGATATTATGAACAGAG 128691 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 ||||| ||||| || || ||| ||| | || || ||| || |||||||| || Sbjct 128690 AGACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAAGGTATCATATATT 128631 Query 80275 CCCTCTATGCTATCATCAATCATG 80298 || || || || ||||| ||||| Sbjct 128630 CCTTCAATACTGTCATCCTTCATG 128607 >seq15419 Length=18895 Score = 86.0 bits (94), Expect = 9e-12 Identities = 82/104 (79%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || ||||| ||||| |||||||| |||||| ||| ||||| || || || || | Sbjct 8786 CAAGCAAAATCACAGTGGAGACCCTCATCTCTAGAAATAAGTTCATTTGAGAATGTCAAG 8845 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 50063 || ||||| || || | ||||||||||||||| |||| |||||| Sbjct 8846 CCCGGCATGAGTCCTCTCTTTTTAAGCCAAAAAATGG-CGCAAA 8888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718028889242440