Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq15419 91.5 1e-13 seq3997 91.5 1e-13 >seq15419 Length=18895 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||||||||| || || |||||||||||| ||||||||| ||||| ||||| || Sbjct 8786 CAAGCAAAATCACAGTGGAGACCCTCATCTCTAGAAATAAGTTCATTTGAGAATGTCAAG 8845 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGC 13757 || ||||| | ||||| ||||| | |||||| || || Sbjct 8846 CCCGGCATGAGTCCTCTCTTTTTAAGCCAAAAAATGGC 8883 >seq3997 Length=108068 Score = 91.5 bits (100), Expect = 1e-13 Identities = 232/348 (67%), Gaps = 9/348 (3%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || ||||| || || || ||||||||||| |||| || || ||||| || || || Sbjct 89779 AAGCACGCGAAGTCGCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAGAAAGTC 89838 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 | ||| ||||| || || || || || | ||||||||| || ||| |||||| ||| Sbjct 89839 AGTCCCGGCATTAACCCGCGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAG 89898 Query 13777 AATATTCCCTCAACTGCA-GCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 || || ||||| || ||| || ||||| | || || || | |||||| || || Sbjct 89899 AAGATCCCCTCCAC-GCACGCGAACGCCACGAGACGCTCGGCGAACGATTCTGAGCCGT- 89956 Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895 |||||||| ||||| | | || || | || || || |||||||| Sbjct 89957 --CGATCCATTTCAGGGCCCACTTGGCCTTCTTCACCACGCAAGGGATGGTCTCGATTGC 90014 Query 13896 ATTGAATAAATGTTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 13953 | ||| | | | |||||| ||| |||| ||||| | || | || | ||| Sbjct 90015 GTGGAAGAGGCGGTGCTTCTCGGAGGAGTCCTTG--ATGTAGGATTCGAGGAGGAGGCTG 90072 Query 13954 TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAA 14001 ||||| || ||||| ||||| || || || ||||| || ||||| ||| Sbjct 90073 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCCATAGAAA 90120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478428945358440