Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq15419 91.5 1e-13
seq3997 91.5 1e-13
>seq15419
Length=18895
Score = 91.5 bits (100), Expect = 1e-13
Identities = 79/98 (81%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719
|| ||||||||||| || || |||||||||||| ||||||||| ||||| ||||| ||
Sbjct 8786 CAAGCAAAATCACAGTGGAGACCCTCATCTCTAGAAATAAGTTCATTTGAGAATGTCAAG 8845
Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGC 13757
|| ||||| | ||||| ||||| | |||||| || ||
Sbjct 8846 CCCGGCATGAGTCCTCTCTTTTTAAGCCAAAAAATGGC 8883
>seq3997
Length=108068
Score = 91.5 bits (100), Expect = 1e-13
Identities = 232/348 (67%), Gaps = 9/348 (3%)
Strand=Plus/Plus
Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716
|| ||||| || || || ||||||||||| |||| || || ||||| || || ||
Sbjct 89779 AAGCACGCGAAGTCGCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAGAAAGTC 89838
Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776
| ||| ||||| || || || || || | ||||||||| || ||| |||||| |||
Sbjct 89839 AGTCCCGGCATTAACCCGCGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAG 89898
Query 13777 AATATTCCCTCAACTGCA-GCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835
|| || ||||| || ||| || ||||| | || || || | |||||| || ||
Sbjct 89899 AAGATCCCCTCCAC-GCACGCGAACGCCACGAGACGCTCGGCGAACGATTCTGAGCCGT- 89956
Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895
|||||||| ||||| | | || || | || || || ||||||||
Sbjct 89957 --CGATCCATTTCAGGGCCCACTTGGCCTTCTTCACCACGCAAGGGATGGTCTCGATTGC 90014
Query 13896 ATTGAATAAATGTTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 13953
| ||| | | | |||||| ||| |||| ||||| | || | || | |||
Sbjct 90015 GTGGAAGAGGCGGTGCTTCTCGGAGGAGTCCTTG--ATGTAGGATTCGAGGAGGAGGCTG 90072
Query 13954 TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAA 14001
||||| || ||||| ||||| || || || ||||| || ||||| |||
Sbjct 90073 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCCATAGAAA 90120
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478428945358440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |