Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq7849 91.5 1e-13 seq5804 89.7 4e-13 seq2938 84.2 2e-11 >seq7849 Length=122270 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | ||| | |||| || ||||| || | |||||||||| Sbjct 79700 CCTCCACGGAGGCGGAGCACAAGGTGGAGTGTTGATTCCTTCTGGATGTTGTAATCGGCA 79759 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || ||||| || || |||||||| |||| ||||||||||| | || Sbjct 79760 AGAGTACGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGGA 79819 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | |||||| || || |||| | |||| || | ||| ||| || ||| ||| || Sbjct 79820 ATACCTTCCTTGTCTTGGATCTTCACTTTCACATTATCAATTGTATC-AGAGCTCTCAAC 79878 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || ||||| ||||| || || ||||| || |||||| Sbjct 79879 CTCAAGAGTGATTGTCTTTCCAGTTAGGGTCTTTACAAAGATCTGCATT 79927 >seq5804 Length=153150 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | |||||| || | || ||| || || | || ||||||| | Sbjct 33244 CCACCACGCAGACGAAGCACCAAGTGCAGGGTCGACTCTTTCTGAATGTTATAATCGGCC 33185 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || ||||| || || || || |||||||||| ||| || || | || Sbjct 33184 AGGGTGCGCCCATCCTCCAACTGCTTCCCAGCGAAAATCAATCTCTGCTGGTCCGGTGGG 33125 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || |||| | | |||||| || | | ||||| | ||| ||| || Sbjct 33124 ATTCCCTCCTTGTCTTGGATCTTCGCCTTGACTTTGTCGATGGTGTC-CGAGCTCTCCAC 33066 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| |||||||| || || || || ||||||||||| Sbjct 33065 CTCGAGGGTAATAGTCTTTCCGGTGAGGGTCTTGACGAAAATTTGCAT 33018 >seq2938 Length=28785 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | |||||| || | || |||||| || | || ||||| | | Sbjct 10955 CCACCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTATAATCAGCC 10896 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || ||||| || || || ||||||||||||| ||| || || | || Sbjct 10895 AGGGTGCGTCCATCCTCCAACTGCTTCCCAGCAAAAATCAATCTCTGCTGGTCCGGTGGG 10836 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || |||| | | || || || ||| ||||| | ||| ||| || Sbjct 10835 ATTCCCTCCTTGTCTTGGATCTTCGCCTTAACATTGTCAATGGTGTC-CGAGCTCTCAAC 10777 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| || || || |||||||| ||||| Sbjct 10776 CTCCAGGGTAATTGTCTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 10729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381245402341818