Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq8535 141 1e-28 seq6526 140 4e-28 seq3997 104 3e-17 seq10 93.3 6e-14 seq6300 89.7 7e-13 >seq8535 Length=22056 Score = 141 bits (156), Expect = 1e-28 Identities = 404/612 (66%), Gaps = 17/612 (3%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || |||||||||||||||| ||||| |||| || | ||||| || || ||||| Sbjct 6596 CACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAGA 6655 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||||| || |||||||| ||||||||||| | |||| || ||| || ||||| Sbjct 6656 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGAA 6714 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCACTGTCAT 42239 ||| || || || ||| || || || || || || | ||| | | || ||| Sbjct 6715 GATCCCCTCCACGCACGCGAATGCGATGAGCCTTTCGGC-GAACGATTCTGAACCGTC-- 6771 Query 42240 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299 |||||||| ||||| | ||||| |||| || ||||| | || || || || | Sbjct 6772 -GATCCACTTCAACGCCCACTTTGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGT 6830 Query 42300 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 ||||| ||| || || || || | || | |||| || || || |||| Sbjct 6831 GGAAGAGGCGGTTCTTCTCGGCCGAGTCCTTGATGTAGGATTCGAGCAGGAGGCTGTACA 6890 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 |||| || || ||||| || ||||| || || || |||||||| | || |||| | Sbjct 6891 TTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCTTCGGCGA 6950 Query 42420 CCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTG 42479 | ||||| || | ||||| |||| | || ||| || || || || ||| | Sbjct 6951 CTTGTACCTCCTTCATGAATCGGCCAGCGAGGTTCTCGAGGACGATGCCATCTGAGGCGG 7010 Query 42480 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGTG-TTAATTTATTCC 42536 | || || || | || || | || || | || ||||| ||||| | || || Sbjct 7011 CGAAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCATCCC 7070 Query 42537 AAT--CATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 | | | ||| || | || | ||| ||||| || ||||||| || || ||||| || Sbjct 7071 AGTGGCGTTG--GTCCTGCGACAGATCCACTTCCTCCGCCGTCCAGAACGACGCTTCGGC 7128 Query 42595 CTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGG 42654 ||| || ||||| | |||||| | | || ||||| ||||| || |||| || ||| Sbjct 7129 CTTCTTGTACATCTCCCAGATCTGCGGGTACTGAATCGGGAACATGCAGAATCGATCTGG 7188 Query 42655 ATTTGGTGCAAG 42666 ||||| || || Sbjct 7189 GTTTGGGGCGAG 7200 >seq6526 Length=28452 Score = 140 bits (154), Expect = 4e-28 Identities = 405/616 (66%), Gaps = 17/616 (3%) Strand=Plus/Plus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 ||| || |||||||||||||||| ||||| |||| || | ||||| || || || Sbjct 21886 CAAGCACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGT 21945 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAA 42179 ||| || ||||||| || |||||||| ||||||||||| | |||| || ||| || | Sbjct 21946 GAGACCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGA 22004 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCACTG 42235 ||||||| || || | ||| || || || ||||| || | ||| | | || | Sbjct 22005 AGAAGATCCCCTCGAAGCACGCGAACGCGATGAGTCTTTCGGC-GAACGATTCTGAACCG 22063 Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 || ||||| || ||||| | |||||| |||| || ||||| || || || || Sbjct 22064 TC---GATCCATTTCAACGCCCACTTGGCCTTTTTTTCCACGCAAGGGATGGTCTCGATC 22120 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 || | ||||| || || || || | | || | |||| || || || Sbjct 22121 GCGTGGAAGAGGCGGTCCTTCTCGGCCGGGTCCCTGATGTAGGATTCGAGCAGGAGGCTG 22180 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 |||||||| || || ||||| || ||||| || || || |||||||| | || ||| Sbjct 22181 TACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCCCGCGCTTCG 22240 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 | ||| ||||| || | || || | || | || ||| || || ||||| | Sbjct 22241 GCAACTTGTACCTCCTTCATGAAACGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAG 22300 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGTGTTAATTTAT 42533 || || || || || | || ||||| || || | || ||||| ||||| | Sbjct 22301 GCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCG 22360 Query 42534 TCCAA---TCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTT 42590 ||| | | ||| || | || | ||| || || || ||||||| ||||| |||| Sbjct 22361 TCCCAGTGGCGTTG--GTCCTGCGACAGATCCACCTCCTCCGCCGTCCAGAATGACGCTT 22418 Query 42591 CTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTAT 42650 | ||||| || ||||| | |||||| | | || || || ||||| || |||| | Sbjct 22419 CAGCCTTCTTGTACATCTCCCAGATCTGCGGGTACTGGATCGGGAACATGCAGAATCGGT 22478 Query 42651 TTGGATTTGGTGCAAG 42666 ||| ||||| ||||| Sbjct 22479 CTGGGTTTGGGGCAAG 22494 >seq3997 Length=108068 Score = 104 bits (114), Expect = 3e-17 Identities = 382/592 (65%), Gaps = 15/592 (3%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || ||||| |||||||| || ||||| |||| |||| ||||| || | Sbjct 89774 ACAGCAAGCACGCGAAGTCGCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAGA 89833 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | || ||||| ||||||| || ||||| || ||||||||||| | |||| || ||| Sbjct 89834 AAGTCAGTCCCGGCATTAACCCGCGCTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCG 89892 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT- 42234 || |||||||| || || || ||| || || | || | ||| | | || || Sbjct 89893 GAGAAGAAGATCCCCTCCACGCACGCGAACGCCACGAGACGCTCGGC--GAACGATTCTG 89950 Query 42235 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 | | | ||||| || | ||||| | ||||||||| || ||||| || || || | Sbjct 89951 AGCCGTCGATCCATTTCAGGGCCCACTTGGCCTTCTTCACCACGCAAGGGATGGTCTCGA 90010 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 | || | ||||| || || || || || | || | |||| | || | Sbjct 90011 TTGCGTGGAAGAGGCGGTGCTTCTCGGAGGAGTCCTTGATGTAGGATTCGAGGAGGAGGC 90070 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 | ||||| || || || ||||| || || || ||||| || || |||||| | ||||| Sbjct 90071 TGTACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCCATAGAAAGCGCGGGCCT 90130 Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCAC 42473 | | ||||| || || | || || | || | ||| ||| || || ||||| Sbjct 90131 CAGCGACCTGGACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGAGGACGATGCCGTCGG 90190 Query 42474 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA--ATTT 42531 |||||| || || || | || || || || | | ||||| | |||| ||| Sbjct 90191 AGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGCCTCTCGTCGGCGGTTAGGGTTT 90250 Query 42532 ATTCCAATCATTG----ATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATG 42587 ||| || || | || || | || || || || ||||||| || || | Sbjct 90251 GGTCC---CAGTGGCGAAGGTCAGCGGAGAGGTCCACCTCCTCCGCCGTCCAGAACGACG 90307 Query 42588 CTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639 | |||||||| || ||||| | |||||| | | || || || ||||| || Sbjct 90308 CCTCTGCCTTCTTGTACATCTCCCAGATCTACGGGTACTGGATCGGGAACAT 90359 >seq10 Length=262601 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | || | || |||| ||| |||||| | |||||||| || |||| Sbjct 128810 CCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACTCGAAGCATTGGAACAACACCA 128751 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 ||||||| ||||| || || ||||| || || | ||||| ||||| || || Sbjct 128750 TTGGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGGATATTATGAACAGAG 128691 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 ||||| ||||| || || ||| ||| | || || ||| || |||||||| || Sbjct 128690 AGACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAAGGTATCATATATT 128631 Query 72358 CCCTCTATACTATCATCCATCATG 72381 || || ||||| |||||| ||||| Sbjct 128630 CCTTCAATACTGTCATCCTTCATG 128607 >seq6300 Length=25064 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | || | || |||| |||| |||||| | |||||||| | |||| Sbjct 13282 CCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGAAGCATTGGAACCACACCA 13341 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 ||||||| ||||| || || |||||||| || | ||||| ||||| || || Sbjct 13342 TTGGATGTCCCATTTGTTCCACGAATATAGCTGCCGGTAGCACGGATATTATGAACAGAA 13401 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| ||||| || || |||| ||| | || || ||| || |||||||| || Sbjct 13402 ACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCTTTCAAGGTATCATATATT 13461 Query 72358 CCCTCTATACTATCATCCATCATG 72381 || || || || ||||| ||||| Sbjct 13462 CCTTCAATGCTGTCATCTTTCATG 13485 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || |||||||| | ||||| || || || || |||||| | | ||||| | || Sbjct 13733 GTCCCTGCATTAAAAAGAGTAGGTGATGCATGAGTGAACCATCTCTGAGACATCAAATGA 13792 Query 72478 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAA 72536 || || | ||| | || | ||||| | ||| || || || || || || | ||| || Sbjct 13793 TAAGTTTTGATAACAGAATAGATATCATCCTTG-TGGATCCCAACAGCAACCCTCATCAA 13851 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| || ||||| |||||||| | ||| | || |||||||||||| || | || | Sbjct 13852 CATGTGTTGAGGCCTTTCAACAACCTTTCCTTGTACTTTCAACAAGTAAGACCTCTCAAG 13911 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 || || || ||||| || | || ||||||||| || || || || Sbjct 13912 TGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAGATTAT 13959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670915031117960