Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq9252 98.7 1e-15
seq7849 95.1 1e-14
seq26701 84.2 2e-11
>seq9252
Length=190322
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| ||||| || || |||||||| ||| || || | |||||| |||||||| ||
Sbjct 60250 GTTGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTTCGGCCGTCTTCTAGTTGTTTTCCG 60191
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
|| ||||||| ||||| || || ||||||||||| |||||||| ||| || ||
Sbjct 60190 GCGAAGATCAGGCGTTGTTGGTCCGGAGGTATGCCCTCTTTGTCCTGAATCTTGGCCTTG 60131
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | ||||| | || || || || | || | |||||| ||||| || |||
Sbjct 60130 ACATTGTCGATGGTGTCGGAGGACTCGACCTCTAGGGTTATCGTCTTCCCGGTTAAGGTT 60071
Query 143168 TTTACGAATATTTGCAT 143184
|| ||||| || |||||
Sbjct 60070 TTCACGAAGATCTGCAT 60054
>seq7849
Length=122270
Score = 95.1 bits (104), Expect = 1e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089
|| ||||| ||||| || || |||||||||| |||||||| ||||| ||||||||||||
Sbjct 81140 TCCTCGAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGATCCGGAGGAATGCCTTCTTTG 81199
Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149
|| ||||| ||| | | || | |||||| | | || || || | ||| |
Sbjct 81200 TCCTGGATTTTGGCTTTGACGTTGTCGATCGTGTCGGAGCTCTCGACCTCGAGAGTTATG 81259
Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
||||||||||| | ||||| ||||| || |||||
Sbjct 81260 GTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 81294
>seq26701
Length=70828
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 143046
||||| || || || |||||||| || ||| | |||| ||| ||||| || || ||
Sbjct 32245 GTAGACTCCTTCTGGATGTTGTAGTCTGCT-AGGGTGCGGCCGTCCTCGAGCTGCTTTCC 32187
Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106
|||| ||||||| | |||||| || || || |||||||||||||| || ||| ||
Sbjct 32186 AGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTTGCCTT 32127
Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166
| | || | ||||| | | ||| || || | || | ||||||||||| | ||
Sbjct 32126 GACATTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGT 32067
Query 143167 TTTTACGAATATTTGCAT 143184
|| ||||| || |||||
Sbjct 32066 CTTAACGAAGATCTGCAT 32049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506845050852720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |