Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq9252 98.7 1e-15 seq7849 95.1 1e-14 seq26701 84.2 2e-11 >seq9252 Length=190322 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || |||||||| ||| || || | |||||| |||||||| || Sbjct 60250 GTTGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTTCGGCCGTCTTCTAGTTGTTTTCCG 60191 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || ||||||| ||||| || || ||||||||||| |||||||| ||| || || Sbjct 60190 GCGAAGATCAGGCGTTGTTGGTCCGGAGGTATGCCCTCTTTGTCCTGAATCTTGGCCTTG 60131 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || || || || | || | |||||| ||||| || ||| Sbjct 60130 ACATTGTCGATGGTGTCGGAGGACTCGACCTCTAGGGTTATCGTCTTCCCGGTTAAGGTT 60071 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 60070 TTCACGAAGATCTGCAT 60054 >seq7849 Length=122270 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || ||||| ||||| || || |||||||||| |||||||| ||||| |||||||||||| Sbjct 81140 TCCTCGAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGATCCGGAGGAATGCCTTCTTTG 81199 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||||| ||| | | || | |||||| | | || || || | ||| | Sbjct 81200 TCCTGGATTTTGGCTTTGACGTTGTCGATCGTGTCGGAGCTCTCGACCTCGAGAGTTATG 81259 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||||| | ||||| ||||| || ||||| Sbjct 81260 GTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 81294 >seq26701 Length=70828 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 143046 ||||| || || || |||||||| || ||| | |||| ||| ||||| || || || Sbjct 32245 GTAGACTCCTTCTGGATGTTGTAGTCTGCT-AGGGTGCGGCCGTCCTCGAGCTGCTTTCC 32187 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 |||| ||||||| | |||||| || || || |||||||||||||| || ||| || Sbjct 32186 AGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTTGCCTT 32127 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | || | ||||| | | ||| || || | || | ||||||||||| | || Sbjct 32126 GACATTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGT 32067 Query 143167 TTTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 32066 CTTAACGAAGATCTGCAT 32049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506845050852720