Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3997 134 2e-26 seq8535 132 7e-26 seq6526 122 1e-22 >seq3997 Length=108068 Score = 134 bits (148), Expect = 2e-26 Identities = 396/591 (67%), Gaps = 31/591 (5%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| ||| | | || ||||| |||||||| ||||| |||| || || | Sbjct 90358 TGTTCCCGATCCAGTACCCGTAGATCTGGGAGATGTACAAGAAGGCAGAGGCGTCGTTCT 90299 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAG---ACTCGTTTGA 125112 |||||| || ||||| || || ||| ||||| | | ||||| || | | | Sbjct 90298 GGACGGCGGAGGAGGTGGACCTCTCCGCTGACCTTCGCCACTGGGACCAAACCC---TAA 90242 Query 125113 CTGAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGAT 125168 | | | || |||||| || || || ||| | | |||||||| || | |||||| Sbjct 90241 CCG---CCGA-CGAGAGGCACTTCATCTCCCACGTCCTCGCCTTCTTCGCAGCCTCCGAC 90186 Query 125169 GGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCAT-TC-CAGAG 125225 || |||||| ||| ||||| | | | || ||| | ||| | ||| || | ||| Sbjct 90185 GGCATCGTCCTCGAGAATCTCGCCGGC-CGCTTCATGAAGGAGGT--CCAGGTCGCTGAG 90129 Query 125226 GTGTCGTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTC 125284 | || ||||| || || ||||| ||| ||| |||||| | ||||| || |||||| Sbjct 90128 GCC-CGCGCTTTCTATGGCTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTACAG 90070 Query 125285 TACACTGATTGACATGTACATTCGCGA-TCCGCAACGTAAACACATGCTCTTTAACGCAA 125343 || | || ||||| || ||| | | || ||| ||||| |||||| Sbjct 90069 CCTCCTCCTCGAATCCTACATCAAGGACTCCTCCGAG-AAGCACCGCCTCTTCCACGCAA 90011 Query 125344 TCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACG 125403 |||| || | || | | || ||||| | |||| | |||||||| | | Sbjct 90010 TCGAGACCATCCCTTGCGTGGTGAAGAAGGCCAAGTGGGCCCTGAAATGGATCGACGGCT 89951 Query 125404 -ACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTT 125462 | || |||| |||||| | || ||||| ||||| ||| ||||| |||||||| Sbjct 89950 CAGAA----TCGTTCGCCGAGCGTCTCGTGGCGTTCGCGTGCGTGGAGGGGATCTTCTTC 89895 Query 125463 TCGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 || || || || |||| | || |||||||||||||||||||| | ||||| |||||||| Sbjct 89894 TCCGGAAGCTTCTGCG-CGATATTTTGGCTCAAGAAGCGCGGGTTAATGCCGGGACTGAC 89836 Query 125522 GCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 | |||||| | || || |||||||||||||| ||||| ||||| || Sbjct 89835 TTTCTCGAACGAGCTAATCTCGCGAGACGAGGGCCTTCACTGCGACTTCGC 89785 >seq8535 Length=22056 Score = 132 bits (146), Expect = 7e-26 Identities = 380/564 (67%), Gaps = 23/564 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| |||||||| ||||| | || || || ||||||| || || || |||||| Sbjct 7149 ATCTGGGAGATGTACAAGAAGGCCGAAGCGTCGTTCTGGACGGCGGAGGAAGTGGATCTG 7090 Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAG----TTTA 125133 || |||||| | | ||||| || | | || | | || ||||| || | Sbjct 7089 TCGCAGGACCAACGCCACTGGGATGAGGCCCTC-ACCG---CCGA-CGAGAAGCACTTCA 7035 Query 125134 TATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTG 125192 | | ||| | | |||||||| |||| ||| ||||| |||||| ||| || || | || Sbjct 7034 TCACCCACGTCCTCGCCTTCTTCGCCGCCTCAGATGGCATCGTCCTCGAGAACCTCGCTG 6975 Query 125193 ACACGATTCTCTCAAGAGTTGACCATTC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAA 125250 | |||||| | ||| | || | || | || | | || || || ||||| ||||||| Sbjct 6974 GC-CGATTCATGAAGGAGGT-ACAAGTCGCCGAAGCG-CGCGCCTTCTACGGCTTCCAAA 6918 Query 125251 TCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCG 125310 || || |||||| | ||||| ||||||||| ||| | || ||||| | Sbjct 6917 TCGCCATCGAGAACATCCACTCCGAAATGTACAGCCTCCTGCTCGAATCCTACATCAAGG 6858 Query 125311 A-TCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 | || || | | | || ||||| |||| ||||| || || || | | ||| Sbjct 6857 ACTCGGCCGAGAAGA-ACCGCCTCTTCCACGCGATCGAGACCGTCCCTTGCGTGGAAAAA 6799 Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTG 125429 ||||| | |||| | | ||||||||| | | || | ||| |||||| || || Sbjct 6798 AAGGCAAAGTGGGCGTTGAAGTGGATCGACG--GTTCAGAAT-CGTTCGCCGAAAGGCTC 6742 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTG 125488 | |||||||| ||| ||||| |||||||| || || || || |||| | || ||||| Sbjct 6741 ATCGCATTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGAAGCTTCTGCG-CGATATTTTG 6683 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 |||||| |||||||| | ||||| || || || | |||||| | || || ||||| Sbjct 6682 GCTCAAAAAGCGCGGGTTAATGCCGGGTCTCACTTTCTCGAACGAGCTGATCTCGCGAGA 6623 Query 125549 CGAGGGCCTACACTGTGACTTTGC 125572 ||||||| | ||||| || || || Sbjct 6622 CGAGGGCTTGCACTGCGATTTCGC 6599 >seq6526 Length=28452 Score = 122 bits (134), Expect = 1e-22 Identities = 387/585 (66%), Gaps = 19/585 (3%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| ||| | | || ||||| |||||||| |||||| | || || || | Sbjct 22466 TGTTCCCGATCCAGTACCCGCAGATCTGGGAGATGTACAAGAAGGCTGAAGCGTCATTCT 22407 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACT 125114 |||||| || ||||| |||||||| |||||| | | ||||| || | | || Sbjct 22406 GGACGGCGGAGGAGGTGGATCTGTCGCAGGACCAACGCCACTGGGACGAGGCCCTC-ACC 22348 Query 125115 GAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGG 125170 | | || ||||| || || ||| | | |||||||| |||| |||||| || Sbjct 22347 G---CCGA-CGAGAAGCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGG 22292 Query 125171 AATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCA-TTCCAGAGGTG 125228 |||||| ||| || || | | | || ||| | ||| | || | || | || | | Sbjct 22291 CATCGTCCTCGAGAACCTCGCCGGC-CGTTTCATGAAGGAGGT-ACAAGTTGCCGAAGCG 22234 Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 | ||| ||||| ||||||||| || |||||| | ||||| ||||||||| Sbjct 22233 CGGGCCTTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACAGCCTC 22174 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGAC 125348 ||| | || ||||| | || ||| || || ||||| |||| ||||| Sbjct 22173 CTGCTCGAATCCTACATCAGGGACCCGGCCGAGAAGGACCGCCTCTTCCACGCGATCGAG 22114 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || | || | | |||||||| | |||| | | |||||||| | | || Sbjct 22113 ACCATCCCTTGCGTGGAAAAAAAGGCCAAGTGGGCGTTGAAATGGATCGACG--GTTCAG 22056 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468 | ||| |||||| ||||| | || ||||| | | ||||| |||||||| || || Sbjct 22055 AAT-CGTTCGCCGAAAGACTCATCGCGTTCGCGTGCTTCGAGGGGATCTTCTTCTCCGGA 21997 Query 125469 AGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 || || |||| | || ||||||||||| |||||||| | ||||| || || || | Sbjct 21996 AGCTTCTGCG-CGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGTCTCACCTTCTC 21938 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||| | || || |||||||||||| | ||||| || || || Sbjct 21937 GAACGAGCTGATCTCGCGAGACGAGGGCTTGCACTGCGATTTCGC 21893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740811676963960