Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq11116 87.8 1e-12 seq9252 87.8 1e-12 seq26701 82.4 6e-11 seq22277 82.4 6e-11 >seq11116 Length=53430 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || || || || || || |||||||| ||| || ||| ||||||| | |||| Sbjct 28166 TGGAGTGTCGATTCCTTCTGGATGTTGTAGTCGGCCAGTGTTCGGCCGTCTTCAAGTTGT 28107 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | |||| ||||||||||| || ||||| |||||||| ||| ||| Sbjct 28106 TTTCCGGCGAAGATCAGGCGTTGTTGGTCCGGAGGTATTCCCTCTTTGTCCTGAATCTTG 28047 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || || || |||| ||| || || || || || Sbjct 28046 GCCTTGACATTGTCGATGGTGTCTGAGGACTCCACCTCTAGGGTTATCGTCTTCCCGGTT 27987 Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366 || ||||| || || || ||||| || Sbjct 27986 AGGGTTTTCACGAAGATCTGCATCTT 27961 >seq9252 Length=190322 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || || || || || || |||||||| ||| || ||| ||||||||| |||| Sbjct 60256 TGGAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTTCGGCCGTCTTCTAGTTGT 60197 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | |||| ||||||||||| || || || |||||||| ||| ||| Sbjct 60196 TTTCCGGCGAAGATCAGGCGTTGTTGGTCCGGAGGTATGCCCTCTTTGTCCTGAATCTTG 60137 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| ||| || || |||| ||| || || || || || Sbjct 60136 GCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCTAGGGTTATCGTCTTCCCGGTT 60077 Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366 | ||||| || || || ||||| || Sbjct 60076 AAGGTTTTCACGAAGATCTGCATCTT 60051 >seq26701 Length=70828 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || || ||||||||||| || ||| | | | || || | ||| Sbjct 32707 TGTAGGGTCGATTCCTTCTGTATGTTGTAGTCTGCTAGGGTGCGGCCATCCTCCAGCTGT 32648 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | |||| | || ||||| ||| || ||||| ||||| ||| ||| Sbjct 32647 TTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTTGTCTTGAATCTTG 32588 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| ||| |||| || || | ||| ||||| || ||||| Sbjct 32587 GCCTTGACATTGTCAATGGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCTGTG 32528 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| Sbjct 32527 AGGGTCTTAACGAAGATCTGCAT 32505 >seq22277 Length=3790 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || || || |||||||| ||| || | | | |||| || | || Sbjct 1278 TGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAAAGTCCGGCCGTCCTCCAGCTGC 1219 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || || || | |||| ||||| ||||| ||| |||||||||||||| || ||| Sbjct 1218 TTTCCGGCAAAGATCAGCCGTTGCTGGTCCGGTGGGATTCCTTCTTTGTCCTGGATCTTT 1159 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | || ||||| ||| |||| || || | ||| ||||| || || || Sbjct 1158 GC-CTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTCTTGCCAGT 1100 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| Sbjct 1099 GAGGGTCTTCACGAAGATCTGCAT 1076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362061251929461