Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq22277 96.9 3e-15
seq10943 95.1 1e-14
seq5804 89.7 4e-13
seq2938 89.7 4e-13
seq21627 87.8 1e-12
seq12303 86.0 5e-12
>seq22277
Length=3790
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| ||| | || || ||||| || || ||||||||||| | || | | ||||||
Sbjct 1968 ACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCATCCTCC 1909
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952
|||||||| || ||| | || || |||||||||||| || | ||||| ||||| |
Sbjct 1908 AGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGA 1849
Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTTT 19011
||||| || || | | ||| ||||| || | || |||| |||||| |||||
Sbjct 1848 ATTTTTGCCTTGACATTGTCGATGGTATC-AGAGCTTTCGACCTCGAGGGTAATCGTTTT 1790
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || | ||||||||||| || |||||
Sbjct 1789 CCCGGTGAGGGTTTTGACAAAGATCTGCAT 1760
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||| | ||| | || |||||||| || ||||| || ||||||| ||| | | |||||
Sbjct 2197 CACAAGGTGAAGGGTCGACTCCTTCTGGATATTATAGTCCGCCAGGGTTCGGCCATCCTC 2138
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||||| || || ||| | || | |||||||| ||| ||| | ||||| |||||
Sbjct 2137 GAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTG 2078
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
||| ||| || || | | | || ||| | ||| || | ||||||||||||
Sbjct 2077 AATCTTCGCCTTGACATTATCAATCGTGTCGGAACTCTCAACCTCAAGGGTAATGGTTTT 2018
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || | ||| || || |||||||||||
Sbjct 2017 CCCGGTGAGAGTCTTCACGAAAATTTGCAT 1988
>seq10943
Length=105762
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| |||||||| ||||| || || || |||| || || ||||||||||||| || ||
Sbjct 54332 GTTGACTCCTTCTGAATGTTATAGTCAGCCAAAGTCCTGCCGTCCTCCAGCTGCTTCCCA 54273
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| |||| | |||||||||||| || | ||||| ||||| || || ||
Sbjct 54272 GCAAAAATCAACCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGGATCTTAGCCTTA 54213
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | | ||||||| | |||| || | || ||||| || || || || ||
Sbjct 54212 ACATTGTCAATAGTATCGGAACTCTCCACCTCCAATGTGATGGTCTTCCCAGTCAAGGTC 54153
Query 19025 TTGACAAAAATTTGCAT 19041
||||||||||| |||||
Sbjct 54152 TTGACAAAAATCTGCAT 54136
>seq5804
Length=153150
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| |||||||| ||||| ||||| || |||| || | ||||||||||||| || ||
Sbjct 33442 GTCGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTCCTTCCGTCCTCCAGCTGCTTCCCA 33383
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| | || || ||||||||||| || | ||||| ||||| || || ||
Sbjct 33382 GCAAATATCAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCCTGGATCTTAGCCTTG 33323
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | | |||||| | |||| || | ||| ||||| || || || || ||
Sbjct 33322 ACGTTGTCAATGGTATCGGAACTCTCCACCTCCAAGGTGATGGTCTTCCCAGTCAAGGTC 33263
Query 19025 TTGACAAAAATTTGCAT 19041
||||||||||| |||||
Sbjct 33262 TTGACAAAAATCTGCAT 33246
>seq2938
Length=28785
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| |||||||| ||||| || || || |||| || | | ||||||||||| || ||
Sbjct 11153 GTTGACTCCTTCTGAATGTTATAGTCAGCCAAGGTCCTTCCATCCTCCAGCTGCTTCCCA 11094
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| | || || |||||||||||| || | ||||| ||||| || || ||
Sbjct 11093 GCAAAGATCAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGGATCTTAGCCTTA 11034
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | | ||||||| | |||| || | || ||||| || || || || |||
Sbjct 11033 ACATTGTCAATAGTATCGGAACTCTCCACCTCCAATGTGATGGTCTTCCCAGTCAAGGTT 10974
Query 19025 TTGACAAAAATTTGCAT 19041
||||||||||| |||||
Sbjct 10973 TTGACAAAAATCTGCAT 10957
>seq21627
Length=4779
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| ||| | || || ||||| || || ||||||||||| | || | | |||||
Sbjct 2814 ACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCATCCTCA 2873
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952
|||||||| || ||| | || || |||||||||||| || | ||||| ||||| |
Sbjct 2874 AGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGA 2933
Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTTT 19011
||||| || || | | | | ||||| || | || |||| |||||| |||||
Sbjct 2934 ATTTTTGCCTTGACATTGTCAATGGTATC-AGAGCTTTCGACCTCGAGGGTAATCGTTTT 2992
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || | ||||||||||| || |||||
Sbjct 2993 CCCGGTGAGGGTTTTGACAAAGATCTGCAT 3022
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||| | ||| | || |||||||| || ||||| || ||||||| ||| | | |||||
Sbjct 2585 CACAAGGTGAAGGGTCGACTCCTTCTGGATATTATAGTCCGCCAGGGTTCGGCCATCCTC 2644
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||||| || || ||| | || | |||||||| ||| ||| | ||||| |||||
Sbjct 2645 GAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTG 2704
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
||| ||| || || | | | || ||| | ||| || | ||||||||||||
Sbjct 2705 AATCTTCGCCTTGACATTATCAATCGTGTCGGAACTCTCAACCTCAAGGGTAATGGTTTT 2764
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || | ||| || || |||||||||||
Sbjct 2765 CCCGGTGAGAGTCTTCACGAAAATTTGCAT 2794
>seq12303
Length=64598
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898
|||| || |||||||| ||||| ||||| || || | || || |||||||||||||
Sbjct 10622 TGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCTAACGTCCTGCCGTCCTCCAGCTGC 10681
Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958
|| || || | || || |||||||||||| || | |||||| || || || ||
Sbjct 10682 TTCCCAGCGAAGATCAGCCTCTGCTGATCCGGCGGAATGCCCTCCTTATCCTGGATCTTA 10741
Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017
|| || | | | ||| || | || |||| ||| | ||| ||||| || || ||
Sbjct 10742 GCCTTCACATTATCAATAGTGTC-CGAGCTCTCCACTTCCAAGGTGATGGTCTTCCCAGT 10800
Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041
|| || ||||||||||| |||||
Sbjct 10801 CAAGGTCTTGACAAAAATCTGCAT 10824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414437789315074
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |