Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq22277 96.9 3e-15 seq10943 95.1 1e-14 seq5804 89.7 4e-13 seq2938 89.7 4e-13 seq21627 87.8 1e-12 seq12303 86.0 5e-12 >seq22277 Length=3790 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || || ||||| || || ||||||||||| | || | | |||||| Sbjct 1968 ACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCATCCTCC 1909 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || ||| | || || |||||||||||| || | ||||| ||||| | Sbjct 1908 AGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGA 1849 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTTT 19011 ||||| || || | | ||| ||||| || | || |||| |||||| ||||| Sbjct 1848 ATTTTTGCCTTGACATTGTCGATGGTATC-AGAGCTTTCGACCTCGAGGGTAATCGTTTT 1790 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||||||||||| || ||||| Sbjct 1789 CCCGGTGAGGGTTTTGACAAAGATCTGCAT 1760 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || |||||||| || ||||| || ||||||| ||| | | ||||| Sbjct 2197 CACAAGGTGAAGGGTCGACTCCTTCTGGATATTATAGTCCGCCAGGGTTCGGCCATCCTC 2138 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || | |||||||| ||| ||| | ||||| ||||| Sbjct 2137 GAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTG 2078 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| ||| || || | | | || ||| | ||| || | |||||||||||| Sbjct 2077 AATCTTCGCCTTGACATTATCAATCGTGTCGGAACTCTCAACCTCAAGGGTAATGGTTTT 2018 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| || || ||||||||||| Sbjct 2017 CCCGGTGAGAGTCTTCACGAAAATTTGCAT 1988 >seq10943 Length=105762 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| ||||| || || || |||| || || ||||||||||||| || || Sbjct 54332 GTTGACTCCTTCTGAATGTTATAGTCAGCCAAAGTCCTGCCGTCCTCCAGCTGCTTCCCA 54273 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | |||||||||||| || | ||||| ||||| || || || Sbjct 54272 GCAAAAATCAACCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGGATCTTAGCCTTA 54213 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | ||||||| | |||| || | || ||||| || || || || || Sbjct 54212 ACATTGTCAATAGTATCGGAACTCTCCACCTCCAATGTGATGGTCTTCCCAGTCAAGGTC 54153 Query 19025 TTGACAAAAATTTGCAT 19041 ||||||||||| ||||| Sbjct 54152 TTGACAAAAATCTGCAT 54136 >seq5804 Length=153150 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| ||||| ||||| || |||| || | ||||||||||||| || || Sbjct 33442 GTCGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTCCTTCCGTCCTCCAGCTGCTTCCCA 33383 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || || ||||||||||| || | ||||| ||||| || || || Sbjct 33382 GCAAATATCAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCCTGGATCTTAGCCTTG 33323 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | |||||| | |||| || | ||| ||||| || || || || || Sbjct 33322 ACGTTGTCAATGGTATCGGAACTCTCCACCTCCAAGGTGATGGTCTTCCCAGTCAAGGTC 33263 Query 19025 TTGACAAAAATTTGCAT 19041 ||||||||||| ||||| Sbjct 33262 TTGACAAAAATCTGCAT 33246 >seq2938 Length=28785 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| ||||| || || || |||| || | | ||||||||||| || || Sbjct 11153 GTTGACTCCTTCTGAATGTTATAGTCAGCCAAGGTCCTTCCATCCTCCAGCTGCTTCCCA 11094 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || || |||||||||||| || | ||||| ||||| || || || Sbjct 11093 GCAAAGATCAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGGATCTTAGCCTTA 11034 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | ||||||| | |||| || | || ||||| || || || || ||| Sbjct 11033 ACATTGTCAATAGTATCGGAACTCTCCACCTCCAATGTGATGGTCTTCCCAGTCAAGGTT 10974 Query 19025 TTGACAAAAATTTGCAT 19041 ||||||||||| ||||| Sbjct 10973 TTGACAAAAATCTGCAT 10957 >seq21627 Length=4779 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || || ||||| || || ||||||||||| | || | | ||||| Sbjct 2814 ACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCATCCTCA 2873 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || ||| | || || |||||||||||| || | ||||| ||||| | Sbjct 2874 AGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGA 2933 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTTT 19011 ||||| || || | | | | ||||| || | || |||| |||||| ||||| Sbjct 2934 ATTTTTGCCTTGACATTGTCAATGGTATC-AGAGCTTTCGACCTCGAGGGTAATCGTTTT 2992 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||||||||||| || ||||| Sbjct 2993 CCCGGTGAGGGTTTTGACAAAGATCTGCAT 3022 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || |||||||| || ||||| || ||||||| ||| | | ||||| Sbjct 2585 CACAAGGTGAAGGGTCGACTCCTTCTGGATATTATAGTCCGCCAGGGTTCGGCCATCCTC 2644 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || | |||||||| ||| ||| | ||||| ||||| Sbjct 2645 GAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTG 2704 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| ||| || || | | | || ||| | ||| || | |||||||||||| Sbjct 2705 AATCTTCGCCTTGACATTATCAATCGTGTCGGAACTCTCAACCTCAAGGGTAATGGTTTT 2764 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| || || ||||||||||| Sbjct 2765 CCCGGTGAGAGTCTTCACGAAAATTTGCAT 2794 >seq12303 Length=64598 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| || |||||||| ||||| ||||| || || | || || ||||||||||||| Sbjct 10622 TGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCTAACGTCCTGCCGTCCTCCAGCTGC 10681 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || || | || || |||||||||||| || | |||||| || || || || Sbjct 10682 TTCCCAGCGAAGATCAGCCTCTGCTGATCCGGCGGAATGCCCTCCTTATCCTGGATCTTA 10741 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | | | ||| || | || |||| ||| | ||| ||||| || || || Sbjct 10742 GCCTTCACATTATCAATAGTGTC-CGAGCTCTCCACTTCCAAGGTGATGGTCTTCCCAGT 10800 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || || ||||||||||| ||||| Sbjct 10801 CAAGGTCTTGACAAAAATCTGCAT 10824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414437789315074