Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq7849 87.8 1e-12
>seq7849
Length=122270
Score = 87.8 bits (96), Expect = 1e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024
|||| || | ||||||||||| || |||| || ||||| ||| |||| | |||||| |
Sbjct 80454 CATCCTCGAGCTGTTTTCCTGCGAAGATCAGGCGCTGCTGATCCGGAGGAATACCTTCCT 80513
Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084
| ||| |||||| ||||| || ||| ||||||| ||| || |||| ||| |
Sbjct 80514 TGTCTTGAATTTTGGCCTTGACATTATCAATTGTATCTGAGCTCTCGACCTCGAGCGTGA 80573
Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCG 44125
|||| || || |||| || || || || || |||||| ||
Sbjct 80574 TTGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCATGCCG 80614
Score = 87.8 bits (96), Expect = 1e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024
|||| || | ||||||||||| || |||| || ||||| ||| |||| | |||||| |
Sbjct 80682 CATCCTCGAGCTGTTTTCCTGCGAAGATCAGGCGCTGCTGATCCGGAGGAATACCTTCCT 80741
Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084
| ||| |||||| ||||| || ||| ||||||| ||| || |||| ||| |
Sbjct 80742 TGTCTTGAATTTTGGCCTTGACATTATCAATTGTATCTGAGCTCTCGACCTCGAGCGTGA 80801
Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCG 44125
|||| || || |||| || || || || || |||||| ||
Sbjct 80802 TTGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCATGCCG 80842
Score = 87.8 bits (96), Expect = 1e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024
|||| || | ||||||||||| || |||| || ||||| ||| |||| | |||||| |
Sbjct 80910 CATCCTCGAGCTGTTTTCCTGCGAAGATCAGGCGCTGCTGATCCGGAGGAATACCTTCCT 80969
Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084
| ||| |||||| ||||| || ||| ||||||| ||| || |||| ||| |
Sbjct 80970 TGTCTTGAATTTTGGCCTTGACATTATCAATTGTATCTGAGCTCTCGACCTCGAGCGTGA 81029
Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCG 44125
|||| || || |||| || || || || || |||||| ||
Sbjct 81030 TTGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCATGCCG 81070
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971
|||||||||||| || ||| || || || || || || | ||| |||| ||
Sbjct 79489 CACCAAATGTAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCCAGAGTCCGCCCATCCTC 79548
Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031
|||||| || ||||| || |||| || || || ||| | || | || ||||||||
Sbjct 79549 CAATTGCTTCCCTGCGAAGATCAGCCTCTGTTGATCCGGTGGAATCCCCTCTTTATCCTG 79608
Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091
||| ||| || || || ||| ||||| | ||| || |||| ||| ||||| ||
Sbjct 79609 AATCTTTGCCTTCACGTTATCAATCGTATCAGAGCTCTCAACCTCGAGCGTGATTGTCTT 79668
Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||||||| || || ||||| ||||||||
Sbjct 79669 GCCGGTTAGGGTTTTGACAAAGATTTGCAT 79698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354662062350708
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |