Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq7849 87.8 1e-12 >seq7849 Length=122270 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||||||||||| || |||| || ||||| ||| |||| | |||||| | Sbjct 80454 CATCCTCGAGCTGTTTTCCTGCGAAGATCAGGCGCTGCTGATCCGGAGGAATACCTTCCT 80513 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| |||||| ||||| || ||| ||||||| ||| || |||| ||| | Sbjct 80514 TGTCTTGAATTTTGGCCTTGACATTATCAATTGTATCTGAGCTCTCGACCTCGAGCGTGA 80573 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCG 44125 |||| || || |||| || || || || || |||||| || Sbjct 80574 TTGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCATGCCG 80614 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||||||||||| || |||| || ||||| ||| |||| | |||||| | Sbjct 80682 CATCCTCGAGCTGTTTTCCTGCGAAGATCAGGCGCTGCTGATCCGGAGGAATACCTTCCT 80741 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| |||||| ||||| || ||| ||||||| ||| || |||| ||| | Sbjct 80742 TGTCTTGAATTTTGGCCTTGACATTATCAATTGTATCTGAGCTCTCGACCTCGAGCGTGA 80801 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCG 44125 |||| || || |||| || || || || || |||||| || Sbjct 80802 TTGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCATGCCG 80842 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||||||||||| || |||| || ||||| ||| |||| | |||||| | Sbjct 80910 CATCCTCGAGCTGTTTTCCTGCGAAGATCAGGCGCTGCTGATCCGGAGGAATACCTTCCT 80969 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| |||||| ||||| || ||| ||||||| ||| || |||| ||| | Sbjct 80970 TGTCTTGAATTTTGGCCTTGACATTATCAATTGTATCTGAGCTCTCGACCTCGAGCGTGA 81029 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCG 44125 |||| || || |||| || || || || || |||||| || Sbjct 81030 TTGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCATGCCG 81070 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||||||||| || ||| || || || || || || | ||| |||| || Sbjct 79489 CACCAAATGTAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCCAGAGTCCGCCCATCCTC 79548 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 |||||| || ||||| || |||| || || || ||| | || | || |||||||| Sbjct 79549 CAATTGCTTCCCTGCGAAGATCAGCCTCTGTTGATCCGGTGGAATCCCCTCTTTATCCTG 79608 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| ||| || || || ||| ||||| | ||| || |||| ||| ||||| || Sbjct 79609 AATCTTTGCCTTCACGTTATCAATCGTATCAGAGCTCTCAACCTCGAGCGTGATTGTCTT 79668 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||| || || ||||| |||||||| Sbjct 79669 GCCGGTTAGGGTTTTGACAAAGATTTGCAT 79698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354662062350708