Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq17719 105 6e-18 seq10943 95.1 1e-14 seq22277 93.3 4e-14 seq21627 93.3 4e-14 seq5804 93.3 4e-14 seq2938 93.3 4e-14 seq7849 86.0 5e-12 seq5189 86.0 5e-12 seq26701 82.4 6e-11 seq4434 82.4 6e-11 >seq17719 Length=101630 Score = 105 bits (116), Expect = 6e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| ||||| || ||||||| |||||||| ||| || | Sbjct 79420 CTCCTTCTGGATGTTGTAATCGGCCAAAGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 79361 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | |||||||| ||| ||| | | ||||||||| || || ||||| | Sbjct 79360 GATGAGCCGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 79301 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | ||||| ||||| |||||||| ||||| || || |||||| Sbjct 79300 GTCG--ATGGTGTCCGAGGACTCGACCTCGAGGGTTATGGTCTTACCCGTTAGGGTTTTC 79243 Query 48713 ACAAAAATCTGCAT 48726 || || |||||||| Sbjct 79242 ACGAAGATCTGCAT 79229 >seq10943 Length=105762 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCC 48574 ||| | ||| || || |||||| |||||||| || |||||||| ||| || ||||| Sbjct 54345 CACAAGATGGAGGGTTGACTCCTTCTGAATGTTATAGTCAGCCAAA-GTC-CTGCCGTCC 54288 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 ||||||||||| || | |||| || | |||||||||| || | | ||||||||| Sbjct 54287 TCCAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCC 54228 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||| | | | || ||||||| | |||| ||| | ||| ||||| Sbjct 54227 TGGATCTTAGCCTTAACATTGTCAATAGTATCGGAACTCTCCACCTCCAATGTGATGGTC 54168 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || || | || || ||||||||||||||| Sbjct 54167 TTCCCAGTCAAGGTCTTGACAAAAATCTGCATC 54135 >seq22277 Length=3790 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| || || || || || |||| ||| | ||||| |||||| Sbjct 2190 TGAAGGGTCGACTCCTTCTGGATATTATAGTCCGCCAGGGTTCGGCCATCCTCGAGCTGC 2131 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| | | || || | |||||| ||| || | || ||||||||| ||| ||| Sbjct 2130 TTCCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTC 2071 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | || || |||| | ||| ||| | || |||||||| |||||| Sbjct 2070 GCCTTGACATTATCAATCGTGTCGGAACTCTCAACCTCAAGGGTAATGGTTTTCCCGGTG 2011 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 ||||| ||||| ||||| |||||| Sbjct 2010 AGAGTCTTCACGAAAATTTGCATC 1987 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || ||||||||||| || | || | ||||||||||| || ||| | | Sbjct 1950 TCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAAG 1891 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | | |||||||||| || | | ||||||||| |||||| ||||| | Sbjct 1890 ATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGAATTTTTGCCTTGACATTG 1831 Query 48656 GCTATGGTATCGGTAGACTCCG-TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | |||||||| | || | || ||||| || || ||||| |||||||| ||||| || Sbjct 1830 TCGATGGTATCAG-AGCTTTCGACCTCGAGGGTAATCGTTTTCCCGGTGAGGGTTTTGAC 1772 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 1771 AAAGATCTGCAT 1760 >seq21627 Length=4779 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| || || || || || |||| ||| | ||||| |||||| Sbjct 2592 TGAAGGGTCGACTCCTTCTGGATATTATAGTCCGCCAGGGTTCGGCCATCCTCGAGCTGC 2651 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| | | || || | |||||| ||| || | || ||||||||| ||| ||| Sbjct 2652 TTCCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTC 2711 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | || || |||| | ||| ||| | || |||||||| |||||| Sbjct 2712 GCCTTGACATTATCAATCGTGTCGGAACTCTCAACCTCAAGGGTAATGGTTTTCCCGGTG 2771 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 ||||| ||||| ||||| |||||| Sbjct 2772 AGAGTCTTCACGAAAATTTGCATC 2795 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || ||||||||||| || | || | ||||| ||||| || ||| | | Sbjct 2832 TCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAG 2891 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | | |||||||||| || | | ||||||||| |||||| ||||| | Sbjct 2892 ATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGAATTTTTGCCTTGACATTG 2951 Query 48656 GCTATGGTATCGGTAGACTCCG-TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | |||||||| | || | || ||||| || || ||||| |||||||| ||||| || Sbjct 2952 TCAATGGTATCAG-AGCTTTCGACCTCGAGGGTAATCGTTTTCCCGGTGAGGGTTTTGAC 3010 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 3011 AAAGATCTGCAT 3022 >seq5804 Length=153150 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 || || ||||||||||| || || | ||| ||||||| |||||||| ||| | | Sbjct 32524 TCTTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCAAAG 32465 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAG 48653 || | | |||||||||| || | | ||||||||| || || ||||| | | Sbjct 32464 ATGAGCCTCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 32405 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 || ||||| |||| |||| ||||| || ||||| || |||||||| ||||||| Sbjct 32404 TCG--ATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTCA 32347 Query 48714 CAAAAATCTGCATC 48727 |||| ||||||||| Sbjct 32346 CAAAGATCTGCATC 32333 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTC-GTCCT 48575 ||| | ||| || || |||||| ||||||||||| |||||||| ||| || ||||| Sbjct 33455 CACAAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCCAAA-GTCCTTCCGTCCT 33397 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || | | || | | ||||||||| || | || ||||||||| Sbjct 33396 CCAGCTGCTTCCCAGCAAATATCAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCCT 33337 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||||| | |||||||||| | |||| ||| | || ||||| | Sbjct 33336 GGATCTTAGCCTTGACGTTGTCAATGGTATCGGAACTCTCCACCTCCAAGGTGATGGTCT 33277 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || || | || || ||||||||||||||| Sbjct 33276 TCCCAGTCAAGGTCTTGACAAAAATCTGCATC 33245 >seq2938 Length=28785 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 || || || |||||||| ||||| | ||| ||||||| |||||||| || || || Sbjct 10235 TCTTTCTGGATGTTGTAGTCAGCGAGGGTTCGGCCGTCCTCGAGCTGCTTTCCTGCGAAA 10176 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAG 48653 || | | |||||||||| || | | ||||||||| || || ||| | | | Sbjct 10175 ATGAGCCTCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTG 10116 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 || ||||| |||| ||| ||||| || ||||| || |||||||| ||||||| Sbjct 10115 TCG--ATGGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTCA 10058 Query 48714 CAAAAATCTGCATC 48727 |||||||||||||| Sbjct 10057 CAAAAATCTGCATC 10044 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCT 48575 ||| | ||| || || |||||| |||||||| || |||||||| ||| || |||| Sbjct 11166 CACAAGATGGAGGGTTGACTCCTTCTGAATGTTATAGTCAGCCAAG-GTCCTTCCATCCT 11108 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || | | || | | |||||||||| || | | ||||||||| Sbjct 11107 CCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCT 11048 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | || ||||||| | |||| ||| | ||| ||||| | Sbjct 11047 GGATCTTAGCCTTAACATTGTCAATAGTATCGGAACTCTCCACCTCCAATGTGATGGTCT 10988 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || | ||||| |||||||||||||| Sbjct 10987 TCCCAGTCAAGGTTTTGACAAAAATCTGCAT 10957 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 || || || |||||||| || || | ||| ||||||| |||||||| ||| || | Sbjct 10463 TCTTTCTGGATGTTGTAGTCTGCGAGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAG 10404 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAG 48653 || | | |||||||||| || | || ||||| ||| || || ||||| | | Sbjct 10403 ATGAGCCTCTGCTGATCCGGAGGGATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTG 10344 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 || ||||| |||| ||| ||||| || ||||| || |||||||| || || | Sbjct 10343 TCG--ATGGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 10286 Query 48714 CAAAAATCTGCAT 48726 ||||||||||||| Sbjct 10285 CAAAAATCTGCAT 10273 >seq7849 Length=122270 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||| ||||||||| |||||||| || || || || || ||||||| ||||| Sbjct 80180 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGC-AAGAGTACGGCCGTCCTCGAGCTG 80238 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 || ||| || | || | |||||||||||| || | || ||||||||| |||||| Sbjct 80239 TTTTCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGAATACCTTCCTTGTCTTGAATTTT 80298 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | || ||||| | ||| ||||| || || || || || || Sbjct 80299 GGCCTTGACATTATCAATTGTATCTGAGCTCTCGACCTCGAGCGTGATTGTCTTGCCAGT 80358 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || || |||||||| Sbjct 80359 TAGGGTTTTTACGAAGATCTGCAT 80382 >seq5189 Length=32747 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || ||||| || |||||| ||||||||||| |||||||| ||| | ||||| Sbjct 27033 CACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTACGCCCATCCTC 27092 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||| ||||| || | | || || | ||||| |||| || || ||||| || Sbjct 27093 CAGTTGCTTCCCAGCAAAGATCAATCTTTGCTGGTCCAGAGGGGTACCCTCCTTATCTTG 27152 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 | || | ||| ||| | |||||||| | | |||| ||| | ||||||||| || Sbjct 27153 GACCTTTTCCTTCATATTATCAATGGTATCTGAACTCTCCACCTCAAGTGTTATGGTCTT 27212 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| | ||| || || || || ||||| Sbjct 27213 TCCGGTCAAAGTCTTGACCAAGATTTGCAT 27242 >seq26701 Length=70828 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 48497 AAACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCA 48556 |||||||| || | | | ||| | ||||| || |||||| || ||||| ||||| Sbjct 33190 AAACCTCCACGGAGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGGATGTTATAATCT 33131 Query 48557 GCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACC 48616 || | ||| | ||||| |||||||| || | | || | | ||||||||| Sbjct 33130 GCAAGGGTTCGGCCATCCTCGAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGT 33071 Query 48617 GGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCC 48676 || | | ||||||||| |||||| ||||| | | |||||||| | || Sbjct 33070 GGGATCCCCTCCTTGTCCTGAATTTTTGCCTTGACATTGTCAATGGTATCAGAGCTTTCT 33011 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | |||||| ||||| || ||||| || || |||||||||||||| Sbjct 33010 ACCTCTAGTGTTATTGTTTTTCCTGTGAGGGTCTTGACAAAAATCTGCAT 32961 >seq4434 Length=125464 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 48497 AAACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCA 48556 ||||| ||||| | | | || | ||| || || |||||| ||||||||||| ||| Sbjct 10021 AAACCACCGCGGAGGCGGAGGACGAGATGCAGGGTTGACTCCTTCTGAATGTTGTAGTCA 10080 Query 48557 GCCAATTGTCGCT-CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCAC 48615 || || ||| | |||||||||||||||| || || | |||| | |||||||||| Sbjct 10081 GCTAA-AGTCCTTCCGTCCTCCAGCTGCTTCCCAGCGAAGATTAGCCTCTGCTGATCCGG 10139 Query 48616 CGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTC 48675 ||| | | ||||| || || || ||| | | | ||||| || | ||| Sbjct 10140 CGGAATGCCCTCCTTATCATGGATCTTAGCCTTCACATTATCAATGGTGTCCGAGCTCTC 10199 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || | || ||||| || ||||| | ||| || ||||||||||||||| Sbjct 10200 CACTTCCAAGGTGATGGTCTTCCCGGTCAAAGTCTTGACAAAAATCTGCATC 10251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421114014412721