Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq1755 113 2e-20
seq7317 109 3e-19
seq5275 107 1e-18
seq3245 107 1e-18
seq1190 107 1e-18
seq1758 105 3e-18
seq1097 105 3e-18
seq21306 104 1e-17
seq17553 104 1e-17
seq15183 104 1e-17
seq3504 104 1e-17
seq1716 104 1e-17
seq9592 102 4e-17
seq16632 100 1e-16
seq16619 100 1e-16
seq4643 98.7 5e-16
>seq1755
Length=73880
Score = 113 bits (124), Expect = 2e-20
Identities = 79/90 (88%), Gaps = 3/90 (3%)
Strand=Plus/Plus
Query 11445 AAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501
|||||| |||| ||||||||| | | |||||||| ||||||||||||||||||||||
Sbjct 22186 AAAAATTAAATATGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 22245
Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCGT 11531
||||||| ||||||||||||||| ||||||
Sbjct 22246 ACGCTCTAACCAACTGAGCTAATAGGCCGT 22275
>seq7317
Length=232173
Score = 109 bits (120), Expect = 3e-19
Identities = 79/92 (86%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| |||||| ||||||||||||| | | |||||||| |||| ||||||||||||||||
Sbjct 194432 AAAAAAAAAAAAAATTGGCCCATGCAGGTCTCGAACCTGCGACATTCGCGTTATTAGCAC 194491
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532
|||||||| |||| |||||||||| |||| ||
Sbjct 194492 GACGCTCTAACCAGCTGAGCTAATAGGCCATC 194523
>seq5275
Length=148834
Score = 107 bits (118), Expect = 1e-18
Identities = 70/78 (90%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
|| |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 136870 AAGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 136811
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||| ||||
Sbjct 136810 CAACTGAGCTAATAGGCC 136793
Score = 82.4 bits (90), Expect = 4e-11
Identities = 68/84 (81%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
||| ||| |||||||||| | | || | ||| | ||||||||||||||| || || ||
Sbjct 135229 AAACTCAGTTTGGCCCATGCAGGTCTCAACCCTGCTACCTTCGCGTTATTAACATGATGC 135170
Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529
||| ||||||||||||||| ||||
Sbjct 135169 TCTAACCAACTGAGCTAATAGGCC 135146
>seq3245
Length=176157
Score = 107 bits (118), Expect = 1e-18
Identities = 77/89 (87%), Gaps = 3/89 (3%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|||||||| | |||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 172467 AATAAAAAGAC---TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 172523
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||| ||||
Sbjct 172524 GACGCTCTAACCAACTGAGCTAATAGGCC 172552
>seq1190
Length=138266
Score = 107 bits (118), Expect = 1e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513
||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 95524 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 95583
Query 11514 ACTGAGCTAATGGGCC 11529
||||||||||| ||||
Sbjct 95584 ACTGAGCTAATAGGCC 95599
>seq1758
Length=53145
Score = 105 bits (116), Expect = 3e-18
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 37910 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 37851
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||| ||||
Sbjct 37850 CTGAGCTAATAGGCC 37836
>seq1097
Length=74556
Score = 105 bits (116), Expect = 3e-18
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 51357 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 51298
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||| ||||
Sbjct 51297 CTGAGCTAATAGGCC 51283
>seq21306
Length=28924
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 24728 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 24787
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 24788 TGAGCTAATAGGCC 24801
>seq17553
Length=43162
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 18293 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 18234
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 18233 TGAGCTAATAGGCC 18220
>seq15183
Length=28514
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 25096 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 25037
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 25036 TGAGCTAATTGGCC 25023
>seq3504
Length=38797
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 14154 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 14213
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 14214 TGAGCTAATAGGCC 14227
>seq1716
Length=84689
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 64377 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 64436
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 64437 TGAGCTAATAGGCC 64450
>seq9592
Length=138597
Score = 102 bits (112), Expect = 4e-17
Identities = 75/88 (85%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501
|||| ||| ||||||| ||||| | | |||||| | ||||||||||||||||||||||
Sbjct 67255 ATAACTAATAAAATTGGTCCATGCAGGTCTCGAACATGCGACCTTCGCGTTATTAGCACG 67314
Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| |||| |||||||||| ||||
Sbjct 67315 ACGCTCTAACCAGCTGAGCTAATAGGCC 67342
>seq16632
Length=92582
Score = 100 bits (110), Expect = 1e-16
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 89800 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 89859
Query 11516 TGAGCTAATGGGCCGTC 11532
|||||||| |||| ||
Sbjct 89860 TGAGCTAACAGGCCATC 89876
>seq16619
Length=149687
Score = 100 bits (110), Expect = 1e-16
Identities = 75/89 (84%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| |||||| || ||||||||| | | |||||| | |||||||||||||||||||||
Sbjct 59591 AACAAAAAAGAAACATGGCCCATGCAGGTCTCGAACATGCGACCTTCGCGTTATTAGCAC 59650
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| |||||||||| |||| ||||
Sbjct 59651 GACGCTCTAACCAACTGAGTTAATAGGCC 59679
>seq4643
Length=104635
Score = 98.7 bits (108), Expect = 5e-16
Identities = 80/96 (83%), Gaps = 4/96 (4%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAATCA---AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493
|||||| |||| || |||||||||||| | | || ||||| ||||||||||||||
Sbjct 1959 AATTAACAAAACTTCGTGGAATTGGCCCATGTAGGTCTC-AACCTGCGACCTTCGCGTTA 1901
Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||| ||||||||| ||||| ||||
Sbjct 1900 TTAGCACGACGCTCTAACCAACTGATCTAATAGGCC 1865
Lambda K H
0.639 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261406042203796
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |