Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1755 113 2e-20 seq7317 109 3e-19 seq5275 107 1e-18 seq3245 107 1e-18 seq1190 107 1e-18 seq1758 105 3e-18 seq1097 105 3e-18 seq21306 104 1e-17 seq17553 104 1e-17 seq15183 104 1e-17 seq3504 104 1e-17 seq1716 104 1e-17 seq9592 102 4e-17 seq16632 100 1e-16 seq16619 100 1e-16 seq4643 98.7 5e-16 >seq1755 Length=73880 Score = 113 bits (124), Expect = 2e-20 Identities = 79/90 (88%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 11445 AAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||| |||| ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 22186 AAAAATTAAATATGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 22245 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||| ||||||||||||||| |||||| Sbjct 22246 ACGCTCTAACCAACTGAGCTAATAGGCCGT 22275 >seq7317 Length=232173 Score = 109 bits (120), Expect = 3e-19 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| ||||||||||||| | | |||||||| |||| |||||||||||||||| Sbjct 194432 AAAAAAAAAAAAAATTGGCCCATGCAGGTCTCGAACCTGCGACATTCGCGTTATTAGCAC 194491 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||| |||| |||||||||| |||| || Sbjct 194492 GACGCTCTAACCAGCTGAGCTAATAGGCCATC 194523 >seq5275 Length=148834 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 136870 AAGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 136811 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 136810 CAACTGAGCTAATAGGCC 136793 Score = 82.4 bits (90), Expect = 4e-11 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||| ||| |||||||||| | | || | ||| | ||||||||||||||| || || || Sbjct 135229 AAACTCAGTTTGGCCCATGCAGGTCTCAACCCTGCTACCTTCGCGTTATTAACATGATGC 135170 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 135169 TCTAACCAACTGAGCTAATAGGCC 135146 >seq3245 Length=176157 Score = 107 bits (118), Expect = 1e-18 Identities = 77/89 (87%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| | |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 172467 AATAAAAAGAC---TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 172523 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 172524 GACGCTCTAACCAACTGAGCTAATAGGCC 172552 >seq1190 Length=138266 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 95524 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 95583 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 95584 ACTGAGCTAATAGGCC 95599 >seq1758 Length=53145 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 37910 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 37851 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 37850 CTGAGCTAATAGGCC 37836 >seq1097 Length=74556 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 51357 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 51298 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 51297 CTGAGCTAATAGGCC 51283 >seq21306 Length=28924 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 24728 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 24787 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 24788 TGAGCTAATAGGCC 24801 >seq17553 Length=43162 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 18293 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 18234 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 18233 TGAGCTAATAGGCC 18220 >seq15183 Length=28514 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 25096 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 25037 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 25036 TGAGCTAATTGGCC 25023 >seq3504 Length=38797 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 14154 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 14213 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 14214 TGAGCTAATAGGCC 14227 >seq1716 Length=84689 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 64377 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 64436 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 64437 TGAGCTAATAGGCC 64450 >seq9592 Length=138597 Score = 102 bits (112), Expect = 4e-17 Identities = 75/88 (85%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||| ||| ||||||| ||||| | | |||||| | |||||||||||||||||||||| Sbjct 67255 ATAACTAATAAAATTGGTCCATGCAGGTCTCGAACATGCGACCTTCGCGTTATTAGCACG 67314 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||| |||||||||| |||| Sbjct 67315 ACGCTCTAACCAGCTGAGCTAATAGGCC 67342 >seq16632 Length=92582 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 89800 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 89859 Query 11516 TGAGCTAATGGGCCGTC 11532 |||||||| |||| || Sbjct 89860 TGAGCTAACAGGCCATC 89876 >seq16619 Length=149687 Score = 100 bits (110), Expect = 1e-16 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| || ||||||||| | | |||||| | ||||||||||||||||||||| Sbjct 59591 AACAAAAAAGAAACATGGCCCATGCAGGTCTCGAACATGCGACCTTCGCGTTATTAGCAC 59650 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||| |||| |||| Sbjct 59651 GACGCTCTAACCAACTGAGTTAATAGGCC 59679 >seq4643 Length=104635 Score = 98.7 bits (108), Expect = 5e-16 Identities = 80/96 (83%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCA---AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 |||||| |||| || |||||||||||| | | || ||||| |||||||||||||| Sbjct 1959 AATTAACAAAACTTCGTGGAATTGGCCCATGTAGGTCTC-AACCTGCGACCTTCGCGTTA 1901 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| ||||||||| ||||| |||| Sbjct 1900 TTAGCACGACGCTCTAACCAACTGATCTAATAGGCC 1865 Lambda K H 0.639 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261406042203796