Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq4397 132 8e-27
seq17828 129 9e-26
seq6397 123 4e-24
seq16232 116 6e-22
seq6276 111 2e-20
seq2976 109 9e-20
seq8612 105 1e-18
seq9687 100 4e-17
>seq4397
Length=46016
Score = 132 bits (146), Expect = 8e-27
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| |||||||||||||| || ||||| || |||||||| |||||
Sbjct 1888 CTCCGGGACAACATCCAGGGAATCACCAAGCCGGCGATCCGCCGCCTGGCTCGCCGTGGC 1947
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|||||||||||| || || | |||| || |||| ||| | || | |||||||||
Sbjct 1948 GGAGTCAAGCGTATCAGCGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 2007
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| ||| || | || || | ||| || ||||| |||| | ||||| ||
Sbjct 2008 CTCGAGAACGTCATTCGCGACGCCGTTACCTACACAGAGCATGCTAGGAGGAAGACGGTG 2067
Query 16634 ACCTCCATGGATATCGTCTATGC 16656
||| ||||||| | ||||||||
Sbjct 2068 ACCGCCATGGACGTGGTCTATGC 2090
>seq17828
Length=32113
Score = 129 bits (142), Expect = 9e-26
Identities = 163/224 (73%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| || || | | ||| || || |||||||| || ||||| ||||| || |||
Sbjct 27665 GCGAAGCGGCACCGTAAAGTTCTCCGTGAAAACATCCAGGGCATCACGAAGCCGGCGATC 27724
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| | ||||||||| | || ||||| |||||| || || | |||| || ||||
Sbjct 27725 CGGAGGCTGGCTCGTAGGGGAGGAGTGAAGCGTATCAGCGGTCTCATCTACGAGGAGACA 27784
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| ||| | |||||||||||| ||| ||| || | |||||| | ||| || |||
Sbjct 27785 CGTGGTGTACTCAAGATCTTCCTCGAGAACGTCATTCGCGATGCTGTGACCTACACTGAG 27844
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656
|| ||| ||| |||||||| || ||||||| | || |||||
Sbjct 27845 CATGCTCGACGGAAGACTGTAACGGCCATGGACGTGGTGTATGC 27888
>seq6397
Length=3907
Score = 123 bits (136), Expect = 4e-24
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| |||||||||||||| || || ||||| ||||||| |||||
Sbjct 2827 CTCCGGGACAACATCCAGGGAATCACCAAGCCGGCGATACGTCGCTTGGCTCGCCGTGGC 2886
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| ||||||||| || || | |||| || || | ||| | ||| | |||||||||
Sbjct 2887 GGTGTCAAGCGTATCAGCGGTCTCATCTACGAGGAAACTCGCGGTGTCCTCAAGATCTTC 2946
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| ||| || | || || | ||| |||||||| ||| | ||||| ||
Sbjct 2947 CTCGAGAACGTCATTCGCGACGCCGTGACCTACACCGAGCATGCTCGGAGGAAGACGGTG 3006
Query 16634 ACCTCCATGGATATCGTCTATGC 16656
||| ||||||| | ||||||||
Sbjct 3007 ACCGCCATGGACGTGGTCTATGC 3029
>seq16232
Length=37374
Score = 116 bits (128), Expect = 6e-22
Identities = 188/268 (70%), Gaps = 2/268 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| || |||| | || || || || |||||||| || ||||| ||||| || ||
Sbjct 23166 GCCAAGCGCCACCGCAAGGTC-CTCCGGGACAACATCCAGGGGATCACGAAGCCGGCGAT 23224
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| | ||||| | | || || |||||| | | ||| || |||| |||||||
Sbjct 23225 CCGGAGGCTGGCGAGGAGAGGAGGGGTCAAGAGGATAAGTGGCCTGATCTACGAAGAGAC 23284
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
| | ||||||||||||||| | ||| || || | |||||| | ||| || ||
Sbjct 23285 CAGAGGGGTTTTGAAGATCTTCTTGGAGAATGTGATTCGCGATGCTGTGACCTACACTGA 23344
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||||| | ||||| || || |||||||| | || ||||| ||||| | || ||
Sbjct 23345 GCACGCTAGGAGGAAGACGGTGACGGCCATGGATGTTGTGTATGCGTTGAAGAGGCAGGG 23404
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | ||||||| ||||| |||||
Sbjct 23405 AAGGACTCTTTATGGGTTTGGTGGTTAA 23432
>seq6276
Length=44980
Score = 111 bits (122), Expect = 2e-20
Identities = 161/225 (72%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| || || | | || || || || |||||||| || ||||| ||||| || ||
Sbjct 1650 GCGAAGCGGCACCGTAAGGTC-CTCCGTGACAACATCCAGGGGATCACGAAGCCGGCGAT 1592
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| | |||||||| | || ||||| |||||| || || | ||||||| ||||
Sbjct 1591 CCGGAGGCTGGCTCGCAGGGGCGGAGTGAAGCGTATCAGCGGCCTCATCTATGAGGAGAC 1532
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| || | |||||||||||| ||| ||| || | ||||| | ||| || ||
Sbjct 1531 GCGTGGCGTGCTCAAGATCTTCCTCGAGAACGTCATTCGCGATGCCGTGACCTACACTGA 1472
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656
||||||| || ||||| || || ||||||| | || |||||
Sbjct 1471 GCACGCTCGCCGGAAGACCGTGACGGCCATGGACGTGGTGTATGC 1427
>seq2976
Length=17953
Score = 109 bits (120), Expect = 9e-20
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||| ||||| || ||||| || |||||||| | |||||
Sbjct 1687 CGCGACAACATCCAGGGCATCACGAAGCCGGCGATCCGGCGCCTGGCTCGGAGGGGTGGG 1628
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|| ||| | || ||| | |||| || |||| ||| | || | ||||||||||||
Sbjct 1627 GTTAAGAGGATCAGTGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTCCTC 1568
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| || | || ||| | ||| ||||||||||| | |||||||| ||
Sbjct 1567 GAGAACGTCATTCGCGACGCTGTGACCTACACCGAGCACGCCCGGAGGAAGACTGTGACT 1508
Query 16637 TCCATGGATATCGTCTATGC 16656
|||||||| | ||||| ||
Sbjct 1507 GCCATGGATGTGGTCTACGC 1488
>seq8612
Length=76863
Score = 105 bits (116), Expect = 1e-18
Identities = 168/241 (70%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| |||||||| |||||||||||||| || || || | || || | | ||||| |
Sbjct 69291 GAGACAACATCCAGGGAATCACCAAGCCGGCGATTCGGAGACTTGCGAGGAGGGGTGGTG 69232
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| ||| | | ||||| || |||| || |||| ||||| ||| | ||||| |||||
Sbjct 69231 TAAAGAGAATTTCTGGGCTGATCTACGAGGAGACTCGTGGAGTTCTCAAGATTTTCCTGG 69172
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
| | ||| || | |||||| | || || |||||||| | | ||||| || ||
Sbjct 69171 AAAACGTGATTCGTGATGCGGTGACTTACACGGAGCACGCCAGGAGGAAGACGGTGACTG 69112
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
|||||||| | ||||||||| | || | || || | | | ||||| ||||| |||
Sbjct 69111 CCATGGATGTGGTCTATGCACTCAAGAGGCAGGGAAGGACTCTCTATGGCTTTGGTGGTT 69052
Query 16698 A 16698
|
Sbjct 69051 A 69051
>seq9687
Length=170768
Score = 100 bits (110), Expect = 4e-17
Identities = 163/232 (70%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| | || || || || |||||||| || ||||| ||||| || |
Sbjct 69586 CGCCAAGCGCCACCGCAAGGTC-CTCCGGGACAACATCCAGGGGATCACGAAGCCGGCGA 69644
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
| || | |||| | | || || |||||| | || || || |||| |||||||
Sbjct 69645 TTCGGAGGTTGGCGAGGAGAGGAGGGGTCAAGAGGATCAGCGGTCTGATCTACGAAGAGA 69704
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
| | ||||||||||||||| | ||| || || | |||||| | ||| ||||
Sbjct 69705 CCAGAGGGGTTTTGAAGATCTTCTTGGAGAATGTGATTCGCGATGCTGTGACCTACACCG 69764
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662
||||||||| | ||||| || || |||||||| | || ||||| ||||
Sbjct 69765 AGCACGCTAGGAGGAAGACGGTGACGGCCATGGATGTTGTGTATGCGCTGAA 69816
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79050768802653
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |