Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4397 132 8e-27 seq17828 129 9e-26 seq6397 123 4e-24 seq16232 116 6e-22 seq6276 111 2e-20 seq2976 109 9e-20 seq8612 105 1e-18 seq9687 100 4e-17 >seq4397 Length=46016 Score = 132 bits (146), Expect = 8e-27 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| |||||||||||||| || ||||| || |||||||| ||||| Sbjct 1888 CTCCGGGACAACATCCAGGGAATCACCAAGCCGGCGATCCGCCGCCTGGCTCGCCGTGGC 1947 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 |||||||||||| || || | |||| || |||| ||| | || | ||||||||| Sbjct 1948 GGAGTCAAGCGTATCAGCGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 2007 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| || | || || | ||| || ||||| |||| | ||||| || Sbjct 2008 CTCGAGAACGTCATTCGCGACGCCGTTACCTACACAGAGCATGCTAGGAGGAAGACGGTG 2067 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| ||||||| | |||||||| Sbjct 2068 ACCGCCATGGACGTGGTCTATGC 2090 >seq17828 Length=32113 Score = 129 bits (142), Expect = 9e-26 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || || | | ||| || || |||||||| || ||||| ||||| || ||| Sbjct 27665 GCGAAGCGGCACCGTAAAGTTCTCCGTGAAAACATCCAGGGCATCACGAAGCCGGCGATC 27724 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | ||||||||| | || ||||| |||||| || || | |||| || |||| Sbjct 27725 CGGAGGCTGGCTCGTAGGGGAGGAGTGAAGCGTATCAGCGGTCTCATCTACGAGGAGACA 27784 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | |||||||||||| ||| ||| || | |||||| | ||| || ||| Sbjct 27785 CGTGGTGTACTCAAGATCTTCCTCGAGAACGTCATTCGCGATGCTGTGACCTACACTGAG 27844 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 || ||| ||| |||||||| || ||||||| | || ||||| Sbjct 27845 CATGCTCGACGGAAGACTGTAACGGCCATGGACGTGGTGTATGC 27888 >seq6397 Length=3907 Score = 123 bits (136), Expect = 4e-24 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| |||||||||||||| || || ||||| ||||||| ||||| Sbjct 2827 CTCCGGGACAACATCCAGGGAATCACCAAGCCGGCGATACGTCGCTTGGCTCGCCGTGGC 2886 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| || || | |||| || || | ||| | ||| | ||||||||| Sbjct 2887 GGTGTCAAGCGTATCAGCGGTCTCATCTACGAGGAAACTCGCGGTGTCCTCAAGATCTTC 2946 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| || | || || | ||| |||||||| ||| | ||||| || Sbjct 2947 CTCGAGAACGTCATTCGCGACGCCGTGACCTACACCGAGCATGCTCGGAGGAAGACGGTG 3006 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| ||||||| | |||||||| Sbjct 3007 ACCGCCATGGACGTGGTCTATGC 3029 >seq16232 Length=37374 Score = 116 bits (128), Expect = 6e-22 Identities = 188/268 (70%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || || || |||||||| || ||||| ||||| || || Sbjct 23166 GCCAAGCGCCACCGCAAGGTC-CTCCGGGACAACATCCAGGGGATCACGAAGCCGGCGAT 23224 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || |||||| | | ||| || |||| ||||||| Sbjct 23225 CCGGAGGCTGGCGAGGAGAGGAGGGGTCAAGAGGATAAGTGGCCTGATCTACGAAGAGAC 23284 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||||||||||||||| | ||| || || | |||||| | ||| || || Sbjct 23285 CAGAGGGGTTTTGAAGATCTTCTTGGAGAATGTGATTCGCGATGCTGTGACCTACACTGA 23344 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| | ||||| || || |||||||| | || ||||| ||||| | || || Sbjct 23345 GCACGCTAGGAGGAAGACGGTGACGGCCATGGATGTTGTGTATGCGTTGAAGAGGCAGGG 23404 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | ||||||| ||||| ||||| Sbjct 23405 AAGGACTCTTTATGGGTTTGGTGGTTAA 23432 >seq6276 Length=44980 Score = 111 bits (122), Expect = 2e-20 Identities = 161/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | | || || || || |||||||| || ||||| ||||| || || Sbjct 1650 GCGAAGCGGCACCGTAAGGTC-CTCCGTGACAACATCCAGGGGATCACGAAGCCGGCGAT 1592 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | |||||||| | || ||||| |||||| || || | ||||||| |||| Sbjct 1591 CCGGAGGCTGGCTCGCAGGGGCGGAGTGAAGCGTATCAGCGGCCTCATCTATGAGGAGAC 1532 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | |||||||||||| ||| ||| || | ||||| | ||| || || Sbjct 1531 GCGTGGCGTGCTCAAGATCTTCCTCGAGAACGTCATTCGCGATGCCGTGACCTACACTGA 1472 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||||| || ||||| || || ||||||| | || ||||| Sbjct 1471 GCACGCTCGCCGGAAGACCGTGACGGCCATGGACGTGGTGTATGC 1427 >seq2976 Length=17953 Score = 109 bits (120), Expect = 9e-20 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||| ||||| || ||||| || |||||||| | ||||| Sbjct 1687 CGCGACAACATCCAGGGCATCACGAAGCCGGCGATCCGGCGCCTGGCTCGGAGGGGTGGG 1628 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||| | || ||| | |||| || |||| ||| | || | |||||||||||| Sbjct 1627 GTTAAGAGGATCAGTGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTCCTC 1568 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | || ||| | ||| ||||||||||| | |||||||| || Sbjct 1567 GAGAACGTCATTCGCGACGCTGTGACCTACACCGAGCACGCCCGGAGGAAGACTGTGACT 1508 Query 16637 TCCATGGATATCGTCTATGC 16656 |||||||| | ||||| || Sbjct 1507 GCCATGGATGTGGTCTACGC 1488 >seq8612 Length=76863 Score = 105 bits (116), Expect = 1e-18 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| |||||||||||||| || || || | || || | | ||||| | Sbjct 69291 GAGACAACATCCAGGGAATCACCAAGCCGGCGATTCGGAGACTTGCGAGGAGGGGTGGTG 69232 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | | ||||| || |||| || |||| ||||| ||| | ||||| ||||| Sbjct 69231 TAAAGAGAATTTCTGGGCTGATCTACGAGGAGACTCGTGGAGTTCTCAAGATTTTCCTGG 69172 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | ||| || | |||||| | || || |||||||| | | ||||| || || Sbjct 69171 AAAACGTGATTCGTGATGCGGTGACTTACACGGAGCACGCCAGGAGGAAGACGGTGACTG 69112 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | ||||||||| | || | || || | | | ||||| ||||| ||| Sbjct 69111 CCATGGATGTGGTCTATGCACTCAAGAGGCAGGGAAGGACTCTCTATGGCTTTGGTGGTT 69052 Query 16698 A 16698 | Sbjct 69051 A 69051 >seq9687 Length=170768 Score = 100 bits (110), Expect = 4e-17 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||| ||||| || | Sbjct 69586 CGCCAAGCGCCACCGCAAGGTC-CTCCGGGACAACATCCAGGGGATCACGAAGCCGGCGA 69644 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || | |||| | | || || |||||| | || || || |||| ||||||| Sbjct 69645 TTCGGAGGTTGGCGAGGAGAGGAGGGGTCAAGAGGATCAGCGGTCTGATCTACGAAGAGA 69704 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 | | ||||||||||||||| | ||| || || | |||||| | ||| |||| Sbjct 69705 CCAGAGGGGTTTTGAAGATCTTCTTGGAGAATGTGATTCGCGATGCTGTGACCTACACCG 69764 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 ||||||||| | ||||| || || |||||||| | || ||||| |||| Sbjct 69765 AGCACGCTAGGAGGAAGACGGTGACGGCCATGGATGTTGTGTATGCGCTGAA 69816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79050768802653