Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq16707 558 1e-154 seq647 311 3e-80 seq24083 159 1e-34 seq20 159 1e-34 seq6733 152 1e-32 seq574 145 2e-30 seq10199 125 2e-24 seq6008 107 6e-19 seq7956 87.8 5e-13 seq4124 80.6 8e-11 >seq16707 Length=103149 Score = 558 bits (618), Expect = 1e-154 Identities = 713/977 (73%), Gaps = 4/977 (0%) Strand=Plus/Minus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || || ||||| ||||| ||||| | || ||||| || || | ||||| ||| Sbjct 23059 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 23000 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 |||| || | || ||| || ||||| ||||||| ||||| || || || |||||| Sbjct 22999 ACCTTATTAACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGAT 22940 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || |||||||| ||||| || || ||| | ||||||||||||||||| ||| Sbjct 22939 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCT 22880 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || || | |||| | || || ||||| |||||||||| || ||||||||||| Sbjct 22879 GGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATCTGGGAAGC- 22821 Query 19539 GGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTT 19597 |||| || | ||||| ||||||||||| |||||||| ||| | || |||| | ||||| Sbjct 22820 GGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 22761 Query 19598 CTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAAT 19657 |||| | || ||||| || ||| | |||||||||| || | | | || || Sbjct 22760 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTAT 22701 Query 19658 GAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCT 19717 | | || ||||| || |||||| |||| || | |||| ||| |||||| ||||| Sbjct 22700 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCT 22642 Query 19718 CG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTA 19776 | ||||||| |||| ||||| ||||| ||||||||||||| | || || ||||||| Sbjct 22641 TGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTA 22582 Query 19777 CTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACA 19836 |||| ||||||||| | |||||||| ||||| || || |||||||||||||| || |||| Sbjct 22581 CTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACA 22522 Query 19837 TGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGG 19896 || | ||||| ||||| |||||||| || || || ||| ||||||||| || |||| Sbjct 22521 TGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGG 22462 Query 19897 TTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGT 19956 | || || | |||| |||||| ||||| | | ||| || | || || | | Sbjct 22461 TAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGAT 22402 Query 19957 TCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGA 20016 | || ||||| ||||| || ||||||||||| || || || || || ||||| |||| | Sbjct 22401 TTGGTCAAGAGGAAGAAACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAA 22342 Query 20017 TATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCC 20076 | || ||||||||| ||| || || |||||||||||||| ||||| | ||| ||| | Sbjct 22341 TCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGC 22282 Query 20077 CCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATG 20136 | || || || || ||| | || | | || || | |||||||||||||| || || | Sbjct 22281 CTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACG 22222 Query 20137 GTTTTAACTTTAACCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACATGGGCTG 20196 | || || || ||||| || ||||||||| | | || | || || ||||||| Sbjct 22221 GATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTG 22162 Query 20197 ATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACT 20256 || | | || | ||||| || || | ||||||||||| || || ||||||||||||| Sbjct 22161 ATATCATCAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACT 22102 Query 20257 TCCCACTTGATTTAGCT 20273 |||| || || ||||| Sbjct 22101 TCCCTCTAGACCTAGCT 22085 >seq647 Length=36880 Score = 311 bits (344), Expect = 3e-80 Identities = 420/573 (73%), Gaps = 9/573 (2%) Strand=Plus/Minus Query 19369 CTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCA 19428 |||| ||| || ||||| ||||||| || || || || || |||||| ||||| | Sbjct 14177 CTGCAACTTCTGTATTTATTTTCGCCTTCATTGCTGCTCCTCCAGTAGATGCTGATGGTA 14118 Query 19429 TACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAG-CAGTA 19487 | |||||||| ||||| || || || | ||||||||||||||||| || || | || || Sbjct 14117 TTCGTGAGCCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGTCATTA 14058 Query 19488 GTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCA-CTTT 19546 | || | || | || ||||| |||||||||| |||||||||||||| |||| | | Sbjct 14057 AT-CCTACTTCTACAGCTATAGGTTTGCACTTTTACCCGATCTGGGAAGC-GGCATCCAT 14000 Query 19547 AGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGG 19606 ||||| ||||||||||| |||||||| ||| | || |||| | |||||||| | || Sbjct 13999 TGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTGCTTGG 13940 Query 19607 AGTAGCAGCATACGCTGGTAGACAGTGGGAACT-ATCTTACAGATTAGGAATGAGACCAT 19665 |||| ||| ||| | |||||||||| | ||| | | || || ||| ||| | Sbjct 13939 TGTAGTGTGTTACATGGGTCGTGAGTGGGAACTTAGCTTCC-GTTTGGGTATGCAACCTT 13881 Query 19666 GGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TAC 19724 ||| | || |||||| |||| | | |||| ||| |||||| ||||| | | ||| Sbjct 13880 TGATTGTTGTTGCATATTCAGCTCTTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTAC 13822 Query 19725 CCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAAC 19784 ||| |||| |||| |||||| | ||||||||||| | || |||||||||||||| ||| Sbjct 13821 CCAATTGGTTAAGGAAGTTTTTCTAATGGTATGCCTGTAGGAATCTCTGGTACTTTCAAC 13762 Query 19785 TTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGT 19844 || ||| ||||| |||| || || ||||| ||||||||||| | || |||||| | ||| Sbjct 13761 TTCATGATCGTACTCCATGCTGAGCACAACATCCTTATGCACACATTTCACATGTTAGGT 13702 Query 19845 GTTGCTG-GCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTC 19903 | |||| | |||||||| || || | ||| ||||||||| || |||||| ||||| Sbjct 13701 ATAGCTGTGGGTATTCGGCGGCTCCCCATTCAGTGCTATGCATGGTTCTTTGGTAACTTC 13642 Query 19904 CTCGATCATCAAGGAAACAACTGAGGATGTATC 19936 | |||| |||||| || || ||| ||| Sbjct 13641 TAGTTTGATCAGGGAAACCACAGAAAATGAATC 13609 >seq24083 Length=1989 Score = 159 bits (176), Expect = 1e-34 Identities = 182/242 (75%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 20033 TTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATG 20092 ||| || || |||||||||||||||||||| || ||| ||| || || || || || || Sbjct 721 TTTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTG 780 Query 20093 GCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCA 20152 | | || | | || ||| ||||||||||||||||||| |||||||| || || ||||| Sbjct 781 GTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 840 Query 20153 GTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAG 20211 | ||||||||| ||||| || |||| || ||||||||| | | || | | Sbjct 841 ATATGTAGTTGATAGTCAA-GGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTG 899 Query 20212 CTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAG 20271 |||| || || | ||||||||||| || || ||||||||||||||||| || || ||| Sbjct 900 CTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAG 959 Query 20272 CT 20273 || Sbjct 960 CT 961 >seq20 Length=236725 Score = 159 bits (176), Expect = 1e-34 Identities = 182/242 (75%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 20033 TTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATG 20092 ||| || || |||||||||||||||||||| || ||| ||| || || || || || || Sbjct 78392 TTTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTG 78451 Query 20093 GCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCA 20152 | | || | | || ||| ||||||||||||||||||| |||||||| || || ||||| Sbjct 78452 GTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 78511 Query 20153 GTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAG 20211 | ||||||||| ||||| || |||| || ||||||||| | | || | | Sbjct 78512 ATTTGTAGTTGATAGTCAA-GGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTG 78570 Query 20212 CTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAG 20271 |||| || || | ||||||||||| || || ||||||||||||||||| || || ||| Sbjct 78571 CTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAG 78630 Query 20272 CT 20273 || Sbjct 78631 CT 78632 >seq6733 Length=89479 Score = 152 bits (168), Expect = 1e-32 Identities = 218/303 (72%), Gaps = 3/303 (1%) Strand=Plus/Plus Query 19311 ACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCT 19370 || || |||| ||||| | || ||||||| || | ||||| ||| |||| || | Sbjct 8755 ACTGAAAACCATCTTTACATTGGACGGTTTGGTGTTTTGATGATCCCTACCTTATTAACC 8814 Query 19371 GCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATA 19430 || ||| || ||||| ||||||| || || || || || |||||||| ||||| || Sbjct 8815 GCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGGATT 8874 Query 19431 CGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTT 19490 |||||||| ||||| || || || | || |||||||||||||| || || || | || Sbjct 8875 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCAGGTGCCATTATT 8934 Query 19491 CCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCA-CTTTAGA 19549 || | || || ||||| |||||||||| || |||| ||||| ||||| | | || Sbjct 8935 CCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATCT-GGAAG-CGGCATCCGTTGA 8992 Query 19550 TGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGT 19609 ||| |||| | |||||| ||||| ||| | | |||| | ||||||||| | || || Sbjct 8993 TGAATGGTGGTCCAACGGTGGTCCTTATGAGATAATTGTTCTACACTTCTTACTTGGTGT 9052 Query 19610 AGC 19612 ||| Sbjct 9053 AGC 9055 >seq574 Length=41708 Score = 145 bits (160), Expect = 2e-30 Identities = 170/227 (75%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 20048 TTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGG 20107 || |||||||||||| || ||| ||| || || || || || ||| | || | | || Sbjct 2265 TTTTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGG 2324 Query 20108 AATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-G 20166 ||| ||||||||||||||||||| |||||||| || || ||||| || ||||||||| | Sbjct 2325 TATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAG 2384 Query 20167 TCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTG 20226 |||| || |||| || ||||||||| | | || | ||||| || || | | Sbjct 2385 TCAA-GGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGG 2443 Query 20227 AAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCT 20273 |||||||||| || || ||||||||||||||||| || || ||||| Sbjct 2444 AAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCT 2490 >seq10199 Length=21994 Score = 125 bits (138), Expect = 2e-24 Identities = 142/192 (74%), Gaps = 10/192 (5%) Strand=Plus/Plus Query 19947 GGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTT 20006 ||||| | ||||| ||||| ||||| || |||||||| || ||||| || || || Sbjct 14228 GGCTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGCTA---- 14283 Query 20007 GGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTT 20066 ||||| || ||||||||| |||||| || |||| ||||||||||||||| || Sbjct 14284 ------TTGATCTTCCAATATGCTAGTTTCAACAACTCTCTTTCTTTACATTTCTTCCTA 14337 Query 20067 GCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTC 20126 || ||| || || || || || ||| | || | | || ||| |||||||||||||| Sbjct 14338 ACTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 14397 Query 20127 AACCTTAATGGT 20138 ||||| |||||| Sbjct 14398 AACCTAAATGGT 14409 >seq6008 Length=80333 Score = 107 bits (118), Expect = 6e-19 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 20064 CTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCT 20123 || ||| ||| || || || || || ||| | || | | || ||| ||||||||||| Sbjct 50675 CTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCT 50616 Query 20124 TTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAAT 20182 |||||||| |||||||| || || ||||| | ||||||| | ||||| || |||| Sbjct 50615 TTCAACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGGTAGTCAA-GGCCGTGTAAT 50557 Query 20183 CCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCG 20242 || ||||||||| | | || | ||||| || || | ||||| |||| || || Sbjct 50556 TAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGTAAGTTGTGCATGAACG 50497 Query 20243 CAATGCTCATAACTTCCCACTTGATTTAGCT 20273 ||||||||||||||||| || || ||||| Sbjct 50496 TAATGCTCATAACTTCCCTCTAGACCTAGCT 50466 >seq7956 Length=50133 Score = 87.8 bits (96), Expect = 5e-13 Identities = 101/135 (75%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 20037 AATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTT 20096 || || |||| ||||||||||||||| || || ||| || | || || || || | Sbjct 30829 AACAACTCTCCTTCTTTACATTTCTTCCTAACTGCTTGGCCTTTAGTAGGTATCTGATTC 30770 Query 20097 ACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCA 20156 || | | | ||| |||||||||||||||||| |||||||| || || ||||| || Sbjct 30769 ACTGCTTTAGATATCAACACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 30710 Query 20157 GTAGTTGAT-GTCAA 20170 ||||||||| ||||| Sbjct 30709 GTAGTTGATAGTCAA 30695 >seq4124 Length=71480 Score = 80.6 bits (88), Expect = 8e-11 Identities = 98/131 (75%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 19630 AGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCAC 19689 |||||||||| || | | || || ||| ||| ||||| || |||||| |||| | Sbjct 19250 AGTGGGAACTTAGTTTCCGTTTGGGTATGCGACTTTGGATTGCTGTTGCATATTCAGCTC 19191 Query 19690 CACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGT 19748 | | |||| ||| ||||||| ||||| | | |||||| |||| ||||| |||||| | Sbjct 19190 CTGTTGCAGCTGCTATTGCTGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCT 19132 Query 19749 GATGGTATGCC 19759 ||||||||||| Sbjct 19131 GATGGTATGCC 19121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144395766965076