Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6526 134 2e-26 seq8535 123 3e-23 seq3997 105 8e-18 seq6300 84.2 3e-11 >seq6526 Length=28452 Score = 134 bits (148), Expect = 2e-26 Identities = 408/623 (65%), Gaps = 13/623 (2%) Strand=Plus/Plus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 ||| || |||||||||||||||| |||||||||| || || ||||| || || || Sbjct 21886 CAAGCACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGT 21945 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 ||| || ||||||| || |||||||| ||||||||||| | ||| ||| || || Sbjct 21946 GAGACCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAA 22005 Query 33420 GAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TC 33476 |||||| || || | ||| || || || || ||||| || | | || ||| | Sbjct 22006 GAAGATCCCCTCGA-AGCACGCGAACGCGATGAGTCTTTCGGC--GAACGATTCTGAACC 22062 Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 | ||||| || ||||| | |||||| |||| || ||||| || || || || || Sbjct 22063 GTCGATCCATTTCAACGCCCACTTGGCCTTTTTTTCCACGCAAGGGATGGTCTCGATCGC 22122 Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596 | ||||| || || || || | | || | |||| || || || || Sbjct 22123 GTGGAAGAGGCGGTCCTTCTCGGCCGGGTCCCTGATGTAGGATTCGAGCAGGAGGCTGTA 22182 Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656 |||||| || || ||||| || ||||| || || || |||||||| | || |||| Sbjct 22183 CATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCCCGCGCTTCGGC 22242 Query 33657 AATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGC 33716 || ||||| || | || || | || | || || || || ||||| ||| Sbjct 22243 AACTTGTACCTCCTTCATGAAACGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGC 22302 Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATT 33773 || || || || | || ||||| || || | || ||||| | || || | | Sbjct 22303 GGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCGTC 22362 Query 33774 CCAAT--CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 33831 ||| | | ||| || | || | ||| || || ||| | ||||| ||||| || || Sbjct 22363 CCAGTGGCGTTG--GTCCTGCGACAGATCCACCTCCTCCGCCGTCCAGAATGACGCTTCA 22420 Query 33832 GCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTT 33891 ||||| || ||||| | |||||| | || ||||| ||||| || |||| | | Sbjct 22421 GCCTTCTTGTACATCTCCCAGATCTGCGGGTACTGGATCGGGAACATGCAGAATCGGTCT 22480 Query 33892 GGATTTGGTGCAAGGATGGGTTC 33914 || ||||| ||||| | ||| || Sbjct 22481 GGGTTTGGGGCAAGAAGGGGCTC 22503 >seq8535 Length=22056 Score = 123 bits (136), Expect = 3e-23 Identities = 403/619 (65%), Gaps = 13/619 (2%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || |||||||||||||||| |||||||||| || || ||||| || || ||||| Sbjct 6596 CACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAGA 6655 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||||| || |||||||| ||||||||||| | ||| ||| || |||||| Sbjct 6656 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAG 6715 Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TCATGT 33480 || || || || ||| || || || || || || || | | || ||| | | Sbjct 6716 ATCCCCTCCAC-GCACGCGAATGCGATGAGCCTTTCGGC--GAACGATTCTGAACCGTCG 6772 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 |||||||| ||||| | ||||| |||| || ||||| | || || || || | Sbjct 6773 ATCCACTTCAACGCCCACTTTGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGTGG 6832 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 ||||| ||| || || || || | || | |||| || || || |||||| Sbjct 6833 AAGAGGCGGTTCTTCTCGGCCGAGTCCTTGATGTAGGATTCGAGCAGGAGGCTGTACATT 6892 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || || ||||| || ||||| || || || |||||||| | || |||| | Sbjct 6893 TCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCTTCGGCGACT 6952 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 ||||| || | ||||| | || | || || || || || || ||| || Sbjct 6953 TGTACCTCCTTCATGAATCGGCCAGCGAGGTTCTCGAGGACGATGCCATCTGAGGCGGCG 7012 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTCCAA 33777 || || || | || || | || || | || ||||| | || || | || ||| Sbjct 7013 AAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCATCCCAG 7072 Query 33778 T--CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 | | ||| || | || | ||| ||||| ||| | ||||| || || || || |||| Sbjct 7073 TGGCGTTG--GTCCTGCGACAGATCCACTTCCTCCGCCGTCCAGAACGACGCTTCGGCCT 7130 Query 33836 TTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGAT 33895 | || ||||| | |||||| | || || || ||||| || |||| || ||| | Sbjct 7131 TCTTGTACATCTCCCAGATCTGCGGGTACTGAATCGGGAACATGCAGAATCGATCTGGGT 7190 Query 33896 TTGGTGCAAGGATGGGTTC 33914 |||| || || | ||| || Sbjct 7191 TTGGGGCGAGAAGGGGCTC 7209 >seq3997 Length=108068 Score = 105 bits (116), Expect = 8e-18 Identities = 384/594 (65%), Gaps = 19/594 (3%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| ||| || ||||| |||||||| || |||||||||| ||||| ||||| || | Sbjct 89774 ACAGCAAGCACGCGAAGTCGCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAGA 89833 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || ||||| ||||||| || ||||| || ||||||||||| | ||| ||| | Sbjct 89834 AAGTCAGTCCCGGCATTAACCCGCGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCGG 89893 Query 33416 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAAC----CGGC 33470 | |||||||| || || || ||| || || || | || | ||| | ||| | | Sbjct 89894 AGAAGAAGATCCCCTCCAC-GCACGCGAACGCCACGAGACGCTCGGC-GAACGATTCTGA 89951 Query 33471 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530 || ||| ||||| || | ||||| | ||||||||| || ||||| || || || Sbjct 89952 GCCGTC---GATCCATTTCAGGGCCCACTTGGCCTTCTTCACCACGCAAGGGATGGTCTC 90008 Query 33531 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33590 || || | ||||| || || || || || | || | |||| | || Sbjct 90009 GATTGCGTGGAAGAGGCGGTGCTTCTCGGAGGAGTCCTTGATGTAGGATTCGAGGAGGAG 90068 Query 33591 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33650 || ||||| || || || ||||| || || || ||||| || || |||||| | || Sbjct 90069 GCTGTACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCCATAGAAAGCGCGGGC 90128 Query 33651 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTC 33710 ||| | | ||| || || | || || | || | ||| || || || ||||| Sbjct 90129 CTCAGCGACCTGGACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGAGGACGATGCCGTC 90188 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA--GT 33768 |||||| || || || | || || || || | | ||||| | |||| || Sbjct 90189 GGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGCCTCTCGTCGGCGGTTAGGGT 90248 Query 33769 TTATTCCAATCATTG----ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGA 33824 || ||| || || | || || | || || || ||| | ||||| || || Sbjct 90249 TTGGTCC---CAGTGGCGAAGGTCAGCGGAGAGGTCCACCTCCTCCGCCGTCCAGAACGA 90305 Query 33825 TGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878 ||||||||||| || ||||| | |||||| | || ||||| ||||| || Sbjct 90306 CGCCTCTGCCTTCTTGTACATCTCCCAGATCTACGGGTACTGGATCGGGAACAT 90359 >seq6300 Length=25064 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || |||||||| | ||||| || || || || |||||| | | ||| | | || Sbjct 13733 GTCCCTGCATTAAAAAGAGTAGGTGATGCATGAGTGAACCATCTCTGAGACATCAAATGA 13792 Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || | ||| | || | ||||| | ||| || || || || || || | ||| || Sbjct 13793 TAAGTTTTGATAACAGAATAGATATCATCCTTG-TGGATCCCAACAGCAACCCTCATCAA 13851 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||| ||||| |||||||| | ||| | || |||||||||||| || | || | Sbjct 13852 CATGTGTTGAGGCCTTTCAACAACCTTTCCTTGTACTTTCAACAAGTAAGACCTCTCAAG 13911 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 || || || ||||| || | || ||||||||| || || || || Sbjct 13912 TGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAGATTAT 13959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622739127848360