Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq9252 122 8e-23 seq5804 104 2e-17 seq11116 100 3e-16 seq2938 95.1 1e-14 seq892 86.0 6e-12 seq2905 82.4 7e-11 >seq9252 Length=190322 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| ||||| || || |||| ||| | || | || || Sbjct 60051 AAGATGCAGATCTTCGTGAAAACCTTAACCGGGAAGACGATAACCCTAGAGGTCGAGTCC 60110 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | ||||| |||||| |||||||| || |||||||| || Sbjct 60111 TCCGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAAGAGGGCATACCTCCGGAC 60170 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 |||||| | || || | || ||| |||||||| ||||| | ||| | | |||||| Sbjct 60171 CAACAACGCCTGATCTTCGCCGGAAAACAACTAGAAGACGGCCGAACCCTGGCCGACTAC 60230 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || ||||| || |||| ||||| || ||||| | ||||| Sbjct 60231 AACATCCAGAAGGAATCAACGCTCCACCTGGTGCTACGACTTCGCGGAGG 60280 >seq5804 Length=153150 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | || || || | |||||| |||| | || | Sbjct 32334 ATGCAGATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGAGCTCC 32393 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| || || || ||||| ||||| Sbjct 32394 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCGGATCAG 32453 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||| | | ||| || || ||||| || | ||| | || |||||| ||| Sbjct 32454 CAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTCGCCGACTACAAC 32513 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| |||||||| || |||| ||||| || | || |||||||| Sbjct 32514 ATTCAGAAAGAATCCACCCTCCACCTGGTGCTCCGTCTCAGAGGAGG 32560 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | || || || | |||||| | || |||| | Sbjct 32562 ATGCAGATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCCTTGAGGTAGAGAGCTCC 32621 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| || || || || || || || Sbjct 32622 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 32681 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || |||||||| | || ||| || || ||||| || | ||| | | |||||| ||| Sbjct 32682 CAGAGACTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTTGCCGACTACAAC 32741 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| || |||| ||||| || | || ||||| || Sbjct 32742 ATCCAGAAAGAATCCACCCTCCACCTGGTGCTCCGTCTCAGAGGCGG 32788 >seq11116 Length=53430 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || |||| ||| | || | || || Sbjct 27961 AAGATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACGATAACCCTAGAGGTGGAGTCC 28020 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | ||||| |||||| |||||||| || |||||||| || Sbjct 28021 TCAGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAAGAGGGAATACCTCCGGAC 28080 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 |||||| | || || | || ||| |||||||| ||||| | ||| | |||||| Sbjct 28081 CAACAACGCCTGATCTTCGCCGGAAAACAACTTGAAGACGGCCGAACACTGGCCGACTAC 28140 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| || |||| ||||| || Sbjct 28141 AACATCCAGAAGGAATCGACACTCCACCTGGTGCT 28175 >seq2938 Length=28785 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | || || || | |||||| |||| | ||| | Sbjct 10045 ATGCAGATTTTTGTGAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCC 10104 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||| ||||| || || || ||||| ||||| Sbjct 10105 GACACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAG 10164 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||||| || || || || ||||| || | ||| | || ||||| ||| Sbjct 10165 CAGAGGCTCATTTTCGCAGGAAAGCAGCTCGAGGACGGCCGAACCCTCGCTGACTACAAC 10224 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| || |||| || || ||| | || ||||| || Sbjct 10225 ATCCAGAAAGAATCGACCCTCCACCTTGTACTGCGTCTCAGAGGCGG 10271 >seq892 Length=123481 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | || ||| | || | |||||| Sbjct 88486 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAATCA 88427 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | ||||| ||||| |||||||| || || ||||| || Sbjct 88426 TCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATTCCTCCGGAC 88367 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | || || | || ||| ||||| || || || | | | | | || |||||| Sbjct 88366 CAGCAGCGCCTGATCTTCGCCGGAAAACAGCTGGAGGACGGTCGCACCCTCGCCGACTAC 88307 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || || || |||| ||||| || | ||| | ||||| Sbjct 88306 AACATCCAGAAGGAGTCGACGCTCCACCTGGTGCTCCGCCTTCGCGGAGG 88257 >seq2905 Length=56485 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | || ||| | || | ||||| Sbjct 52532 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACTATTACCCTAGAGGTCGAATCC 52591 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | ||||| ||||||| ||||| ||||| || ||||| || Sbjct 52592 TCCGACACCATCGACAATGTCAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGAC 52651 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | || || | || ||| ||||| || || || | | | | || |||||| Sbjct 52652 CAGCAGCGGCTGATCTTCGCCGGAAAACAGCTGGAGGACGGACGCACCCTCGCCGACTAC 52711 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || |||| |||| || Sbjct 52712 AACATCCAGAAGGAGTCGACGCTCCACTTGGTGCT 52746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478502520775120