Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq15657 100 7e-16 seq15652 100 7e-16 seq1133 96.9 9e-15 seq10294 93.3 1e-13 seq19122 89.7 1e-12 seq20716 87.8 5e-12 seq8535 87.8 5e-12 seq6526 86.0 2e-11 seq1735 84.2 6e-11 >seq15657 Length=83188 Score = 100 bits (110), Expect = 7e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| ||||| ||| ||| | | ||||||||||||||| |||| |||||||| || Sbjct 34399 CAGTTCTATGTTGCCGATGGGGAGTTATCATGCCAAATGTATTAGCGCTCTGCTGACATG 34458 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 |||| |||||||| ||||| || ||| ||| || |||||||| ||| | || |||||| Sbjct 34459 GGTCCGGGTGTTCCATTTAACATCGCATCTTATGCCCTACTTACATGCATGATTGCTCAT 34518 Query 111822 TTT 111824 || Sbjct 34519 GTT 34521 Score = 100 bits (110), Expect = 7e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||||||||| ||||||| | ||||| |||||||||||||| |||||||| || Sbjct 65943 CAGTTTTATGTTGCCGACGGGGAATTATCATGTCAAATGTATCAGCGCTCTGCTGACATG 66002 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||| |||||||| ||||| || ||| ||| || ||| | || ||| | || |||||| Sbjct 66003 GGTCTGGGTGTTCCATTTAACATCGCATCTTATGCCCTATTGACATGCATGATTGCTCAT 66062 Query 111822 TTT 111824 || Sbjct 66063 GTT 66065 >seq15652 Length=12745 Score = 100 bits (110), Expect = 7e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||||||||| ||| ||| || | ||||| |||||||||||||| |||||||| || Sbjct 634 CAGTTTTATGTTGCCGATGGGGTGTTATCATGTCAAATGTATCAGCGCTCTGCTGACATG 693 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||| |||||||| ||||| || ||| || || ||| | || ||| | || |||||| Sbjct 694 GGTCTGGGTGTTCCATTTAACATCGCATCTTGTGCCCTATTGACATGCATGATTGCTCAT 753 Query 111822 TTT 111824 || Sbjct 754 GTT 756 >seq1133 Length=68691 Score = 96.9 bits (106), Expect = 9e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 371100 GCACCATGACTAATGATGGAATCCTTCTCCATCTCACCAATTCGGAGACCACCATCGCGT 371159 ||||| ||| ||| ||| ||||| | ||||||||||||| ||||||||| || || ||| Sbjct 21542 GCACCGTGAGCAATCATGCAATCCCTTTCCATCTCACCAAATCGGAGACCCCCGTCACGT 21601 Query 371160 GACCGTCCTTCTGTTGGCGCGCGTGTAAGTAGCTGTTGTGCACCGCGGTTGCGTGCATGT 371219 ||||||||||| | ||| || || || | |||| | || ||| ||| | ||| Sbjct 21602 GACCGTCCTTCAGCGGGCTGTCGAGTCAGGATCTGTACAGGGCCTCGGCCGCGGGAATGG 21661 Query 371220 GACTTGTCAACTACCATGTGCTTGAGGCGCTGATAATAACACGGAGCAATAAAAATCATA 371279 ||| ||| | ||||||||||| || | ||| || || ||| | | || |||||| Sbjct 21662 ATCTTATCATCGACCATGTGCTTCAGCCTCTGGTAGTATGTGGGACCCAGGAATATCATA 21721 Query 371280 G 371280 | Sbjct 21722 G 21722 >seq10294 Length=95238 Score = 93.3 bits (102), Expect = 1e-13 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 371100 GCACCATGACTAATGATGGAATCCTTCTCCATCTCACCAATTCGGAGACCACCATCGCGT 371159 ||||| || ||| ||| ||||| | ||||||||||||| |||||||||||| || ||| Sbjct 58373 GCACCGTGTGCAATCATGCAATCCCTTTCCATCTCACCAAATCGGAGACCACCGTCACGT 58314 Query 371160 GACCGTCCTTCTGTTGGCGCGCGTGTAAGTAGCTGTTGTGCACCGCGGTTGCGTGCATGT 371219 ||||||||||| | ||| | || || | |||| | || ||| || | |||| Sbjct 58313 GACCGTCCTTCAGCAGGCTGTCTAGTGAGGATCTGTACAGGGCCTCGGCCACGGGAATGT 58254 Query 371220 GACTTGTCAACTACCATGTGCTTGAGGCGCTGATAATAACACGGAGCAATAAAAATCATA 371279 ||| ||| | ||||||||||| || | ||| || || ||| | | || |||||| Sbjct 58253 ATCTTATCATCGACCATGTGCTTCAGCCTCTGGTAGTACGTGGGACCCAGGAATATCATA 58194 Query 371280 G 371280 | Sbjct 58193 G 58193 >seq19122 Length=27991 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/123 (76%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| ||||| || ||| | | ||||| |||||||||||||| |||||||| || Sbjct 21965 CAGTTCTATGTT---GATGGGGCGTTATCATGTCAAATGTATCAGCGCTCTGCTGACATG 22021 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||| | |||||| ||||| |||||| ||| || ||| | || ||| | || |||||| Sbjct 22022 GGTCTGGTTGTTCCATTTAACATTGCATCTTATGCCCTATTGACATGCATGATTGCTCAT 22081 Query 111822 TTT 111824 || Sbjct 22082 GTT 22084 Score = 87.8 bits (96), Expect = 5e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| ||||| ||| ||| | | ||||| |||||||||||||| |||||||| || Sbjct 2680 CAGTTCTATGTTGCCGATGGGGAGTTATCATGTCAAATGTATCAGCGCTCTGCTGACATG 2739 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||| ||||||| ||||| || ||| ||| || ||| | || | | | || |||||| Sbjct 2740 GGTCTGCGTGTTCCATTTAACATCGCATCTTATGCCCTATTGACATTCATGATTGCTCAT 2799 Query 111822 TTT 111824 || Sbjct 2800 GTT 2802 >seq20716 Length=3912 Score = 87.8 bits (96), Expect = 5e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| || || ||| ||| | | ||| | |||||||||||| | |||||||| || Sbjct 3340 CAGTTCTACGTTGCCGATGGGGAGTTATCACGTCAAATGTATCAGTGCTCTGCTGACATG 3281 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||| |||||||| ||||| |||||| ||| || ||| ||| ||| | || |||||| Sbjct 3280 GGTCTGGGTGTTCCATTTAACATTGCATCTTATGCCCTATTTAAATGCATGATTGCTCAT 3221 Query 111822 TTT 111824 || Sbjct 3220 GTT 3218 >seq8535 Length=22056 Score = 87.8 bits (96), Expect = 5e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAACGTCTT 22497 || |||||| | |||||| |||| ||||| || | | || ||||| ||| | || Sbjct 6801 AAAAAGGCAAAGTGGGCGTTGAAGTGGATCGACGGTTCAGAATCGTTCGCCGAAAGGCTC 6742 Query 22498 ATTGCATTTGCTGTG-GTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTG 22556 || ||||| || ||| || || || || ||||| || ||| || || || || ||||| Sbjct 6741 ATCGCATTCGC-GTGCGTGGAGGGGATCTTCTTCTCCGGAAGCTTCTGCGCGATATTTTG 6683 Query 22557 GCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGA 22616 ||| ||||| || | | ||||||||||| || || || || ||| | || ||||| Sbjct 6682 GCTCAAAAAGCGCGGGTTAATGCCGGGTCTCACTTTCTCGAACGAGCTGATCTCGCGAGA 6623 Query 22617 TGAGGGTCTTCATACCGATTTTGCGTG 22643 ||||| | || |||||| ||||| Sbjct 6622 CGAGGGCTTGCACTGCGATTTCGCGTG 6596 >seq6526 Length=28452 Score = 86.0 bits (94), Expect = 2e-11 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAACGTCTT 22497 || ||||| | |||||| |||||||||| || | | || ||||| ||| | || Sbjct 22095 AAAAAGGCCAAGTGGGCGTTGAAATGGATCGACGGTTCAGAATCGTTCGCCGAAAGACTC 22036 Query 22498 ATTGCATTTGCTGTGGTT-GAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTG 22556 || || || || ||| || || || || ||||| || ||| || || || || ||||| Sbjct 22035 ATCGCGTTCGC-GTGCTTCGAGGGGATCTTCTTCTCCGGAAGCTTCTGCGCGATATTTTG 21977 Query 22557 GCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGA 22616 ||| ||||| || | | ||||||||||| || || || || ||| | || ||||| Sbjct 21976 GCTCAAAAAGCGCGGGTTAATGCCGGGTCTCACCTTCTCGAACGAGCTGATCTCGCGAGA 21917 Query 22617 TGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA 22652 ||||| | || |||||| ||||| |||| || Sbjct 21916 CGAGGGCTTGCACTGCGATTTCGCGTGCTTGCTCTA 21881 >seq1735 Length=24823 Score = 84.2 bits (92), Expect = 6e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 111729 TCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCA 111788 ||||| |||||||||||||| |||||||| || ||||| ||||| |||||||| ||||| Sbjct 6691 TCATGTCAAATGTATCAGCGCTCTGCTGACATGGGTCTAGGTGTCCCGTTTAACATTGCT 6750 Query 111789 AGTTACGCACTACTTACTTGCTTAATCGCTCATTTT 111824 ||| || || | || ||| | || |||||| || Sbjct 6751 TCTTATGCCCTCTTGACGTGCATGATTGCTCATGTT 6786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302907380195822