Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq9252 118 9e-22 seq5804 98.7 9e-16 seq11116 96.9 3e-15 seq2905 91.5 1e-13 seq2938 89.7 4e-13 >seq9252 Length=190322 Score = 118 bits (130), Expect = 9e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| ||||| || || |||| ||| | || |||||| || Sbjct 60051 AAGATGCAGATCTTCGTGAAAACCTTAACCGGGAAGACGATAACCCTAGAGGTCGAGTCC 60110 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| |||||| |||||||| ||||||||||| || Sbjct 60111 TCCGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAAGAGGGCATACCTCCGGAC 60170 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||| | ||||| | || ||| || ||||| ||||| | | ||| | | ||| || Sbjct 60171 CAACAACGCCTGATCTTCGCCGGAAAACAACTAGAAGACGGCCGAACCCTGGCCGACTAC 60230 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || ||||| || Sbjct 60231 AACATCCAGAAGGAATCAAC 60250 >seq5804 Length=153150 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || || || | || ||| |||| || ||| | | Sbjct 32334 ATGCAGATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGAGCTCC 32393 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || ||||| ||||| Sbjct 32394 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCGGATCAG 32453 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | ||| ||||| ||||| || | | ||| | || ||| || ||| Sbjct 32454 CAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTCGCCGACTACAAC 32513 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| |||||||| || Sbjct 32514 ATTCAGAAAGAATCCAC 32530 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || ||||| | |||||| |||| || ||| | Sbjct 33018 ATGCAAATTTTCGTCAAGACCCTCACCGGAAAGACTATTACCCTCGAGGTGGAGAGCTCG 33077 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| ||||||| ||||| ||||| || || || || || || || Sbjct 33078 GACACCATCGACAAAGTCAAGGCGAAGATCCAAGACAAGGAGGGAATCCCACCGGACCAG 33137 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||||| || || ||||| | || |||| | | | | |||||||||| Sbjct 33138 CAGAGATTGATTTTCGCTGGGAAGCAGTTGGAGGATGGGCGCACCCTGGCCGATTATAAC 33197 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| ||||| || || | || || ||| Sbjct 33198 ATTCAGAAAGAGTCGACCCTGCACTTGGTG 33227 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || || || | || ||| | || || ||| | | Sbjct 32562 ATGCAGATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCCTTGAGGTAGAGAGCTCC 32621 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 32622 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 32681 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | || ||| ||||| ||||| || | | ||| | | ||| || ||| Sbjct 32682 CAGAGACTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTTGCCGACTACAAC 32741 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 32742 ATCCAGAAAGAATCCAC 32758 >seq11116 Length=53430 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || |||| ||| | || || ||| || Sbjct 27961 AAGATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACGATAACCCTAGAGGTGGAGTCC 28020 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||||||||| | ||||| |||||| |||||||| || |||||||| || Sbjct 28021 TCAGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAAGAGGGAATACCTCCGGAC 28080 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||| | ||||| | || ||| || ||||| ||||| | | ||| | ||| || Sbjct 28081 CAACAACGCCTGATCTTCGCCGGAAAACAACTTGAAGACGGCCGAACACTGGCCGACTAC 28140 Query 24168 AACATTCAAAAAGAATCTACA 24188 ||||| || || ||||| ||| Sbjct 28141 AACATCCAGAAGGAATCGACA 28161 >seq2905 Length=56485 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | |||||| | || ||||| || Sbjct 52532 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACTATTACCCTAGAGGTCGAATCC 52591 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||||| ||||| |||||||| ||||| || Sbjct 52592 TCCGACACCATCGACAATGTCAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGAC 52651 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | || ||| || || || || || | | | | || ||| || Sbjct 52652 CAGCAGCGGCTGATCTTCGCCGGAAAACAGCTGGAGGACGGACGCACCCTCGCCGACTAC 52711 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || || || || || | || || ||| Sbjct 52712 AACATCCAGAAGGAGTCGACGCTCCACTTGGTG 52744 >seq2938 Length=28785 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || || || | || ||| |||| || || | | Sbjct 10045 ATGCAGATTTTTGTGAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCC 10104 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| ||||| || ||||| ||||| ||||| Sbjct 10105 GACACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAG 10164 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || |||| || || ||||| ||||| || | | ||| | || || || ||| Sbjct 10165 CAGAGGCTCATTTTCGCAGGAAAGCAGCTCGAGGACGGCCGAACCCTCGCTGACTACAAC 10224 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 10225 ATCCAGAAAGAATCGAC 10241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429795986101755