Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq20919 140 2e-28 seq16433 122 6e-23 seq8407 122 6e-23 seq13237 113 3e-20 seq12414 109 4e-19 seq4844 102 5e-17 seq9252 98.7 7e-16 seq22976 96.9 2e-15 seq2905 96.9 2e-15 seq15470 95.1 8e-15 seq7849 93.3 3e-14 seq22277 89.7 3e-13 seq21627 89.7 3e-13 seq11116 89.7 3e-13 seq16500 87.8 1e-12 seq5702 87.8 1e-12 seq2938 82.4 5e-11 >seq20919 Length=6471 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 5379 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5320 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 5319 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 5285 >seq16433 Length=43565 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || |||||||||||||||||||||||||| ||||||||| |||| || |||||| | Sbjct 35876 AAACCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCAT 35935 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 35936 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 35970 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 37872 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 37931 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 37932 GCCCATATTTAGCCTT 37947 >seq8407 Length=121939 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 13482 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGAAATCTCGT 13423 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||| |||| |||||||||||||||||| Sbjct 13422 TAATCCATTCAAGCGCCTCACTAATTAGATGACGA 13388 >seq13237 Length=26406 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||||||| || | | |||||| | Sbjct 20214 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGACAGGAACAGTGAGAATCTCAT 20155 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| | ||||||||||||||||||||||||| || Sbjct 20154 TAATTCATTCATGCGCGTCACTAATTAGATGATGA 20120 >seq12414 Length=231155 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||| || |||||||||||||||||||| |||| |||||||| || Sbjct 84470 AAGCCCATTCCCTTGTCTATGGTTTCGCTAGATAGTAGACAGGGATAGTGGTAATCTTGT 84411 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||| || ||||||||||||||| || Sbjct 84410 TAATCCATTCATGTGCATCACTAATTAGATGATGA 84376 >seq4844 Length=121914 Score = 102 bits (112), Expect = 5e-17 Identities = 80/94 (85%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG--GT---AATCTCGTT 25957 ||||||||||||||| |||| |||| || ||||||||| |||| || ||||||||| Sbjct 113515 AGCCCGTTCCCTTGGTTGTGATTTCACTGGATAGTAGACAGGGATAGTGAGAATCTCGTT 113574 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| ||||||| ||||||||||||||||||| Sbjct 113575 AATCCATTCATGCATGTCACTAATTAGATGACGA 113608 >seq9252 Length=190322 Score = 98.7 bits (108), Expect = 7e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| || || ||||| || | || || |||| |||| |||||||||||| || Sbjct 60244 TCCTTCTGGATGTTGTAGTCGGCCAGGGTTCGGCCGTCTTCTAGTTGTTTTCCGGCGAAG 60185 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || ||||||||||| || | || | ||| ||||||||| ||| || ||| ||||| Sbjct 60184 ATCAGGCGTTGTTGGTCCGGAGGTATGCCCTCTTTGTCCTGAATCTTGGCCTTGACATTG 60125 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || || || || || |||| || || || || || || |||||||||||| Sbjct 60124 TCGATGGTGTCGGAGGACTCGACCTCTAGGGTTATCGTCTTCCCGGTTAAGGTTTTCACG 60065 Query 38307 AATATCTGCATGTT 38320 || |||||||| || Sbjct 60064 AAGATCTGCATCTT 60051 >seq22976 Length=4458 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 2873 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 2814 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 2813 GCCCATATTTAGCCTT 2798 >seq2905 Length=56485 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 |||||| || || || |||||| || || ||||| || | | ||| |||| || Sbjct 52744 CACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTC 52685 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | ||||||||||| || || || || || || || | || | |||||| ||||| Sbjct 52684 CAGCTGTTTTCCGGCGAAGATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTG 52625 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||| ||| ||| ||||| | || || || ||| || |||| |||||||| || Sbjct 52624 AATCTTTGCCTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCTAGGGTAATAGTCTT 52565 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||| | |||||||||||| |||||||| || Sbjct 52564 CCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 52532 >seq15470 Length=140582 Score = 95.1 bits (104), Expect = 8e-15 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG--GT---AATCTCGT 25956 |||| |||||||||| ||| ||| |||||||||| ||||| || || ||| |||| Sbjct 31066 AAGCATGTTCCCTTGGTTGTCGTTCCGCTAGATAGAAGATAAGGACAGTGCGAATTTCGT 31125 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||||||| Sbjct 31126 TAATCCATTCATGCACGTCACTAATTAGATGACGA 31160 >seq7849 Length=122270 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || ||| ||||||||| || ||||| || | | | ||| |||| || | ||| Sbjct 80180 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGCAAGAGTACGGCCGTCCTCGAGCTGT 80239 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 |||||||| || || ||||| || ||||| | || | ||||| ||||| |||||| Sbjct 80240 TTTCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGAATACCTTCCTTGTCTTGAATTTTG 80299 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| ||||| | | |||||| || || || || | || || || || || || Sbjct 80300 GCCTTGACATTATCAATTGTATCTGAGCTCTCGACCTCGAGCGTGATTGTCTTGCCAGTT 80359 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 | |||||| ||||| ||||||||| Sbjct 80360 AGGGTTTTTACGAAGATCTGCATG 80383 >seq22277 Length=3790 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| || || ||||| || | ||| || |||| || | || ||||||||||| Sbjct 1267 CTCCTTCTGGATGTTGTAGTCGGCTAAAGTCCGGCCGTCCTCCAGCTGCTTTCCGGCAAA 1208 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || ||||| || || | |||| |||||||||||| || ||| ||| ||||| Sbjct 1207 GATCAGCCGTTGCTGGTCCGGTGGGATTCCTTCTTTGTCCTGGATCTTTGCCTTGACATT 1148 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | | || || |||||||| || | || || || || || || | ||| ||||| Sbjct 1147 GTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 1088 Query 38306 GAATATCTGCAT 38317 ||| |||||||| Sbjct 1087 GAAGATCTGCAT 1076 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 38161 CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTT 38220 |||| || | || ||||||||||| || || ||||| || || | |||| ||||| | Sbjct 1460 CGTCCTCAAGCTGCTTTCCGGCAAAGATCAGCCGTTGCTGGTCCGGTGGGATTCCTTCCT 1401 Query 38221 TGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAA 38280 ||||| || || ||| ||||| | | || || ||||| ||||||| || | Sbjct 1400 TGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCAGAGCTTTCGACTTCTAGGGTGA 1341 Query 38281 TAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | ||||| ||||| | ||| ||||| || ||||||||| Sbjct 1340 TGGTTTTTCCCGTGAGGGTCTTCACAAAGATCTGCATG 1303 >seq21627 Length=4779 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| || || ||||| || | ||| || |||| || | || ||||||||||| Sbjct 3515 CTCCTTCTGGATGTTGTAGTCGGCTAAAGTCCGGCCGTCCTCCAGCTGCTTTCCGGCAAA 3574 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || ||||| || || | |||| |||||||||||| || ||| ||| ||||| Sbjct 3575 GATCAGCCGTTGCTGGTCCGGTGGGATTCCTTCTTTGTCCTGGATCTTTGCCTTGACATT 3634 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | | || || |||||||| || | || || || || || || | ||| ||||| Sbjct 3635 GTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATCGTCTTGCCAGTGAGGGTCTTCAC 3694 Query 38306 GAATATCTGCAT 38317 ||| |||||||| Sbjct 3695 GAAGATCTGCAT 3706 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 38161 CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTT 38220 |||| || | || ||||||||||| || || ||||| || || | |||| ||||| | Sbjct 3322 CGTCCTCAAGCTGCTTTCCGGCAAAGATCAGCCGTTGCTGGTCCGGTGGGATTCCTTCCT 3381 Query 38221 TGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAA 38280 ||||| || || ||| ||||| | | || || ||||| ||||||| || | Sbjct 3382 TGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCAGAGCTTTCGACTTCTAGGGTGA 3441 Query 38281 TAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | ||||| ||||| | ||| ||||| || ||||||||| Sbjct 3442 TGGTTTTTCCCGTGAGGGTCTTCACAAAGATCTGCATG 3479 >seq11116 Length=53430 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| || || ||||| || | || || |||| || | |||||||||||| || Sbjct 28154 TCCTTCTGGATGTTGTAGTCGGCCAGTGTTCGGCCGTCTTCAAGTTGTTTTCCGGCGAAG 28095 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || ||||||||||| || | || | || ||||||||| ||| || ||| ||||| Sbjct 28094 ATCAGGCGTTGTTGGTCCGGAGGTATTCCCTCTTTGTCCTGAATCTTGGCCTTGACATTG 28035 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || || ||| || || |||| || || || || || || | |||||||||| Sbjct 28034 TCGATGGTGTCTGAGGACTCCACCTCTAGGGTTATCGTCTTCCCGGTTAGGGTTTTCACG 27975 Query 38307 AATATCTGCATGTT 38320 || |||||||| || Sbjct 27974 AAGATCTGCATCTT 27961 >seq16500 Length=80340 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| ||||| |||||| Sbjct 57244 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATTGGTCTCTT 57303 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 57304 GCCCATATTTAGCCTT 57319 >seq5702 Length=278247 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 6/93 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG------GGTAATCTCG 25955 ||||||||||| |||| |||||||| | | |||| |||| | || || ||||||| Sbjct 223684 AAGCCCGTTCCATTGGTTGTGGTTTTGTTGGATAATAGACAAGGATAGTAGGGAATCTCG 223743 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGA 25988 ||||||| ||||| |||||||||||||||||| Sbjct 223744 TTAATCCATTCATCTGCGTCACTAATTAGATGA 223776 >seq2938 Length=28785 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | ||| | ||| || || |||||| ||||| || || |||| Sbjct 11184 ACCACCACGAAGACGAAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTATAGTCAGC 11125 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| | | | || || | || || || ||||| || || | || ||||| | || Sbjct 11124 CAAGGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGG 11065 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | || || |||||| || || ||| ||||| | | |||||| ||| || || Sbjct 11064 AATCCCCTCCTTGTCCTGGATCTTAGCCTTAACATTGTCAATAGTATCGGAACTCTCCAC 11005 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || || || || ||||||||||| || || |||||||| Sbjct 11004 CTCCAATGTGATGGTCTTCCCAGTCAAGGTTTTGACAAAAATCTGCAT 10957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334838120362151