Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq6526 125 9e-24
seq8535 123 3e-23
seq10 102 1e-16
seq6300 98.7 1e-15
seq3997 95.1 2e-14
seq15419 86.0 8e-12
>seq6526
Length=28452
Score = 125 bits (138), Expect = 9e-24
Identities = 370/563 (66%), Gaps = 13/563 (2%)
Strand=Plus/Plus
Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716
||| || |||||||||||||| | |||||||||| || | ||||| || || ||
Sbjct 21886 CAAGCACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGT 21945
Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 32775
||| || ||||||| || |||||||| ||||||||||| | |||| || ||| || |
Sbjct 21946 GAGACCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGA 22004
Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TC 32833
|||| || || || | ||| || || || ||||| || | | || ||| |
Sbjct 22005 AGAAGATCCCCTCGAAGCACGCGAACGCGATGAGTCTTTCGGC--GAACGATTCTGAACC 22062
Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893
| ||||| || ||||| | |||||| |||| || ||||| || ||||| || ||
Sbjct 22063 GTCGATCCATTTCAACGCCCACTTGGCCTTTTTTTCCACGCAAGGGATGGTCTCGATCGC 22122
Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953
| ||||| || || || || | | || | || | || || || ||
Sbjct 22123 GTGGAAGAGGCGGTCCTTCTCGGCCGGGTCCCTGATGTAGGATTCGAGCAGGAGGCTGTA 22182
Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013
|||||| || || ||||| || ||||| ||||| || ||||||||| | || ||||
Sbjct 22183 CATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCCCGCGCTTCGGC 22242
Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073
|| ||||| || | || || | || | || || || || ||||| |||
Sbjct 22243 AACTTGTACCTCCTTCATGAAACGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGC 22302
Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATT 33130
|| || || || | || ||||| || || | || ||||| | || || | |
Sbjct 22303 GGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCGTC 22362
Query 33131 CCAAT--CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188
||| | | ||| || | || | |||||| || ||| | ||||| ||||| || ||
Sbjct 22363 CCAGTGGCGTTG--GTCCTGCGACAGATCCACCTCCTCCGCCGTCCAGAATGACGCTTCA 22420
Query 33189 GCCTTTTTATACATATTCCAGAT 33211
||||| || ||||| | ||||||
Sbjct 22421 GCCTTCTTGTACATCTCCCAGAT 22443
>seq8535
Length=22056
Score = 123 bits (136), Expect = 3e-23
Identities = 393/602 (65%), Gaps = 13/602 (2%)
Strand=Plus/Plus
Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720
|| |||||||||||||| | |||||||||| || | ||||| || || |||||
Sbjct 6596 CACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAGA 6655
Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779
|| ||||||| || |||||||| ||||||||||| | |||| || ||| || |||||
Sbjct 6656 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGAA 6714
Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TCATGT 32837
|| || || || ||| || || || || || || | | || ||| | |
Sbjct 6715 GATCCCCTCCACGCACGCGAATGCGATGAGCCTTTCGGC--GAACGATTCTGAACCGTCG 6772
Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897
|||||||| ||||| | ||||| |||| || ||||| | ||||| || || |
Sbjct 6773 ATCCACTTCAACGCCCACTTTGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGTGG 6832
Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957
||||| ||| || || || || | || | || | || || || ||||||
Sbjct 6833 AAGAGGCGGTTCTTCTCGGCCGAGTCCTTGATGTAGGATTCGAGCAGGAGGCTGTACATT 6892
Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017
|| || || ||||| || ||||| ||||| || ||||||||| | || |||| |
Sbjct 6893 TCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCTTCGGCGACT 6952
Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077
||||| || | ||||| | || | || || || || || || ||| ||
Sbjct 6953 TGTACCTCCTTCATGAATCGGCCAGCGAGGTTCTCGAGGACGATGCCATCTGAGGCGGCG 7012
Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTCCAA 33134
|| || || | || || | || || | || ||||| | || || | || |||
Sbjct 7013 AAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCATCCCAG 7072
Query 33135 T--CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192
| | ||| || | || | ||||||||| ||| | ||||| || || || || ||||
Sbjct 7073 TGGCGTTG--GTCCTGCGACAGATCCACTTCCTCCGCCGTCCAGAACGACGCTTCGGCCT 7130
Query 33193 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGAT 33252
| || ||||| | |||||| | | || ||||| || || || |||| || ||| |
Sbjct 7131 TCTTGTACATCTCCCAGATCTGCGGGTACTGAATCGGGAACATGCAGAATCGATCTGGGT 7190
Query 33253 TT 33254
||
Sbjct 7191 TT 7192
>seq10
Length=262601
Score = 102 bits (112), Expect = 1e-16
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286
|| || ||||| | || | || |||| ||| |||||| | |||||||| || ||||
Sbjct 128810 CCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACTCGAAGCATTGGAACAACACCA 128751
Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346
|||||||| ||||| || || ||||| || || | ||||| |||||| || ||
Sbjct 128750 TTGGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGGATATTATGAACAGAG 128691
Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406
||||| ||||| || || ||| ||| | || || ||| || |||||||| ||
Sbjct 128690 AGACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAAGGTATCATATATT 128631
Query 63407 CCCTCTATACTATCATCCATCATG 63430
|| || ||||| |||||| |||||
Sbjct 128630 CCTTCAATACTGTCATCCTTCATG 128607
>seq6300
Length=25064
Score = 98.7 bits (108), Expect = 1e-15
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286
|| || ||||| | || | || |||| |||| |||||| | |||||||| | ||||
Sbjct 13282 CCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGAAGCATTGGAACCACACCA 13341
Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346
|||||||| ||||| || || |||||||| || | ||||| |||||| || ||
Sbjct 13342 TTGGATGTCCCATTTGTTCCACGAATATAGCTGCCGGTAGCACGGATATTATGAACAGAA 13401
Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406
| ||| ||||| || || |||| ||| | || || ||| || |||||||| ||
Sbjct 13402 ACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCTTTCAAGGTATCATATATT 13461
Query 63407 CCCTCTATACTATCATCCATCATG 63430
|| || || || ||||| |||||
Sbjct 13462 CCTTCAATGCTGTCATCTTTCATG 13485
Score = 89.7 bits (98), Expect = 7e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526
|| || |||||||| | ||||| || || ||||| |||||| | | ||| | | ||
Sbjct 13733 GTCCCTGCATTAAAAAGAGTAGGTGATGCATGAGTGAACCATCTCTGAGACATCAAATGA 13792
Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585
|| || | ||| | || | ||||| | ||| || || || || || || | ||| ||
Sbjct 13793 TAAGTTTTGATAACAGAATAGATATCATCCTTG-TGGATCCCAACAGCAACCCTCATCAA 13851
Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645
|||||| ||||| |||||||| | ||| | || |||||||||||| || | || |
Sbjct 13852 CATGTGTTGAGGCCTTTCAACAACCTTTCCTTGTACTTTCAACAAGTAAGACCTCTCAAG 13911
Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693
|| || || ||||| || | || ||||||||| || || || ||
Sbjct 13912 TGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAGATTAT 13959
>seq3997
Length=108068
Score = 95.1 bits (104), Expect = 2e-14
Identities = 177/255 (69%), Gaps = 10/255 (4%)
Strand=Plus/Plus
Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712
||| ||| || ||||| |||||||| || |||||||||| |||| ||||| || |
Sbjct 89774 ACAGCAAGCACGCGAAGTCGCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAGA 89833
Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771
| || ||||| ||||||| || ||||| || ||||||||||| | |||| || |||
Sbjct 89834 AAGTCAGTCCCGGCATTAACCCGCGCTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCG 89892
Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGC 32827
|| ||||| || || || || ||| || || | || | ||| | ||| | |
Sbjct 89893 GAGAAGAAGATCCCCTCCACGCACGCGAACGCCACGAGACGCTCGGC-GAACGATTCTGA 89951
Query 32828 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 32887
|| ||| ||||| || | ||||| | ||||||||| || ||||| || |||||
Sbjct 89952 GCCGTC---GATCCATTTCAGGGCCCACTTGGCCTTCTTCACCACGCAAGGGATGGTCTC 90008
Query 32888 TATAGCATTAAAGAG 32902
|| || | |||||
Sbjct 90009 GATTGCGTGGAAGAG 90023
>seq15419
Length=18895
Score = 86.0 bits (94), Expect = 8e-12
Identities = 94/123 (76%), Gaps = 3/123 (2%)
Strand=Plus/Plus
Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720
|| || ||||| ||||| |||||||| |||||| ||| | ||| || || || || |
Sbjct 8786 CAAGCAAAATCACAGTGGAGACCCTCATCTCTAGAAATAAGTTCATTTGAGAATGTCAAG 8845
Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT--CCAGAAAAGA 32778
|| ||||| || || | ||||||||||||||| |||| |||||| | | ||||||||
Sbjct 8846 CCCGGCATGAGTCCTCTCTTTTTAAGCCAAAAAATGG-CGCAAAAGCTGAGAAGAAAAGA 8904
Query 32779 AAA 32781
|||
Sbjct 8905 AAA 8907
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633420358991600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |