Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq8535 150 2e-31
seq6526 138 1e-27
seq22548 91.5 2e-13
seq10252 89.7 6e-13
seq13696 87.8 2e-12
seq11719 87.8 2e-12
seq6599 87.8 2e-12
seq6500 87.8 2e-12
seq3102 87.8 2e-12
seq1597 86.0 7e-12
seq14813 84.2 2e-11
seq6827 84.2 2e-11
seq1834 84.2 2e-11
seq11459 82.4 8e-11
seq6555 82.4 8e-11
seq5715 82.4 8e-11
seq4046 82.4 8e-11
>seq8535
Length=22056
Score = 150 bits (166), Expect = 2e-31
Identities = 502/771 (65%), Gaps = 14/771 (2%)
Strand=Plus/Plus
Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA-CG 92982
||||| || || ||||| |||||||| ||||| ||||| |||||||| | || ||
Sbjct 6428 CTATCCGCGACGAATTCGATGTACTGGCTCATCAGATCACCGTTCATTCCCACCAGGGCG 6487
Query 92983 TACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042
|| || || |||||| || ||| ||| |||| || || || || | ||| |
Sbjct 6488 CACGGG-AGCGCGTCGCACACGAACTCTCTCTCTATCGTCACCGCGTCGGCAACGATCCC 6546
Query 93043 TATTACTCTACTATTTGGTGGTTTTTGTACGACATAA--TTGTACATTAAGCACGCAAAG 93100
| |||| | | | | | ||| || | ||| | | ||| | | |||||| ||
Sbjct 6547 CCTGACTCGG-TCCTCGCTCGGTTT-GTGAGTCATCAACTCGTAGAGAAGGCACGCGAAA 6604
Query 93101 TCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAAC 93160
||| || || || |||||||| || |||| ||| || ||| || | ||| || |
Sbjct 6605 TCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAGACCCGGCATT 6664
Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACCTTC 93219
| || || || |||||||||||||| | ||| || || || || || || || || ||
Sbjct 6665 AACCCGCGCTTTTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGAAGATCCCCTC 6723
Query 93220 CACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTT 93279
|||| || ||||| | | | |||||| || | | || || | |||||| ||
Sbjct 6724 CACGCACGCGAATGCGATGAGCCTTTCGGCGAACGATTCTGA---ACCGTCGATCCACTT 6780
Query 93280 TAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA 93339
|| ||||| | || ||||| | | ||||| | || ||||| |||| || |||
Sbjct 6781 CAACGCCCACTTTGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGTGGAAGAGGCG 6840
Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399
| |||| |||| || ||||| | |||| | || |||||||| || ||
Sbjct 6841 GTTCTTCTCGGCCGAGTCCTTGATGTAGGATTCGAGCAGGAGGCTGTACATTTCGGAGTG 6900
Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459
|| ||||| || || |||||||| |||||||| | ||||| | || || || ||
Sbjct 6901 GATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCTTCGGCGACTTGTACCTC 6960
Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519
| |||| | |||| || || ||| || ||||| || || || || || ||
Sbjct 6961 CTTCATGAATCGGCCAGCGAGGTTCTCGAGGACGATGCCATCTGAGGCGGCGAAGAAGGC 7020
Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTTATCCCAATCGGATAG 93576
| | || | || || || ||||| || | | || || |||||| | | | |
Sbjct 7021 GAGGACGTGGGTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCATCCCAGTGGCGTTG 7080
Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636
|| | || ||||| ||||| || | ||||| ||||| ||||| || || ||||||||
Sbjct 7081 GTCCTGCGACAGATCCACTTCCTCCGCCGTCCAGAACGACGCTTCGGCCTTCTTGTACAT 7140
Query 93637 ATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTT 93687
||||| || | | || ||||| || || ||| || |||| |||||
Sbjct 7141 CTCCCAGATCTGCGGGTACTGAATCGGGAACATGCAGAATCGATCTGGGTT 7191
>seq6526
Length=28452
Score = 138 bits (152), Expect = 1e-27
Identities = 478/733 (65%), Gaps = 22/733 (3%)
Strand=Plus/Plus
Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA-CG 92982
|||||||| | || || ||||||||| ||||| ||||| ||||| || | ||| ||
Sbjct 21722 CTATCAGCGATGAACTCGATGTACTGACTCATCAGATCACCGTTCATCCCCACTAGAGCG 21781
Query 92983 TACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042
|| || || |||||| || ||| ||| |||| || | || || || | |||| |
Sbjct 21782 CACGGG-AGCGCGTCGCACACGAACTCTCTCTCTATCTCCACCGCGTCGGCAACGATTCC 21840
Query 93043 TATTACTC--TACT-ATTTGGTGGTTTTTGTACGACATAA--TTGTACATTAAGCACGCA 93097
| |||| | || | | || |||| | ||| | | ||| | ||||||||
Sbjct 21841 CCTGACTCGTTCCTCACTCAGT-----TTGTGAGTCATCAACTCGTAGAGCAAGCACGCG 21895
Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157
|| ||| || || || |||||||| || |||| ||| || ||| || | ||| ||
Sbjct 21896 AAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTGAGACCCGGC 21955
Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACC 93216
| | || || || |||||||||||||| | ||| || || || || || || || ||
Sbjct 21956 ATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGAAGATCCC 22014
Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276
|| | | || || || | | | |||||| || | | || || | ||||||
Sbjct 22015 CTCGAAGCACGCGAACGCGATGAGTCTTTCGGCGAACGATTCTGA---ACCGTCGATCCA 22071
Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336
||| || ||||| | ||| ||||| | | ||||| | || ||||| |||| || ||
Sbjct 22072 TTTCAACGCCCACTTGGCCTTTTTTTCCACGCAAGGGATGGTCTCGATCGCGTGGAAGAG 22131
Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396
| || |||| ||| || | ||||| | |||| | || |||||||| ||
Sbjct 22132 GCGGTCCTTCTCGGCCGGGTCCCTGATGTAGGATTCGAGCAGGAGGCTGTACATTTCGGA 22191
Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA- 93455
|||| ||||| || || |||||||| |||||||| | ||||| | | || |
Sbjct 22192 GTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCCCGCGCTTCGGCAACTTGTAC 22251
Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515
|| ||| | ||| | | |||| || || ||| || || ||||| || || || |
Sbjct 22252 CTCCTTCATGAAA-CGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGA 22310
Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTTATCCCAATCGG 93572
| || | | || || || || || ||||| || | | || || ||||| | |
Sbjct 22311 AGGCGAGGACGTGTTTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCGTCCCAGTGGC 22370
Query 93573 ATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGT 93632
| | || | || ||||| || || || | ||||| || || ||||| || || ||||
Sbjct 22371 GTTGGTCCTGCGACAGATCCACCTCCTCCGCCGTCCAGAATGACGCTTCAGCCTTCTTGT 22430
Query 93633 ACATATCCCATAT 93645
|||| ||||| ||
Sbjct 22431 ACATCTCCCAGAT 22443
>seq22548
Length=141357
Score = 91.5 bits (100), Expect = 2e-13
Identities = 78/94 (83%), Gaps = 3/94 (3%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| |||||||| | | |||||
Sbjct 79531 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTAAGAGAGCG 79590
Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
||||||| || ||||| ||||| |||| |||||
Sbjct 79591 TGGGTTCAAATCCCACTTCTGAC-AATTTTTATT 79623
>seq10252
Length=178548
Score = 89.7 bits (98), Expect = 6e-13
Identities = 75/91 (82%), Gaps = 6/91 (7%)
Strand=Plus/Minus
Query 126261 TTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA 126320
|| |||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| ||
Sbjct 79939 TTGCAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGA 79882
Query 126321 ----GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || ||||| ||||||
Sbjct 79881 GAGGGCGTGGGTTCAAATCCCACTTCTGACA 79851
>seq13696
Length=36426
Score = 87.8 bits (96), Expect = 2e-12
Identities = 74/90 (82%), Gaps = 6/90 (7%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| ||
Sbjct 2581 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 2638
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAAT 126350
|||||||||| || ||||| |||||| ||
Sbjct 2639 GCGTGGGTTCAAATCCCACTTCTGACATAT 2668
>seq11719
Length=43535
Score = 87.8 bits (96), Expect = 2e-12
Identities = 73/88 (83%), Gaps = 6/88 (7%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| ||
Sbjct 8544 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 8601
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348
|||||||||| || ||||| |||||||
Sbjct 8602 GCGTGGGTTCAAATCCCACTTCTGACAA 8629
>seq6599
Length=35782
Score = 87.8 bits (96), Expect = 2e-12
Identities = 72/87 (83%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 5850 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 5793
Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354
||| || |||||| ||| |||||| ||
Sbjct 5792 TTCAAATCCCACAGCTGTCAAATTGTT 5766
>seq6500
Length=129748
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/85 (84%), Gaps = 2/85 (2%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| |||||||| | | |||||
Sbjct 103074 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGCG 103015
Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348
||||||| || ||||| |||||||
Sbjct 103014 TGGGTTCAAATCCCACTTCTGACAA 102990
>seq3102
Length=177675
Score = 87.8 bits (96), Expect = 2e-12
Identities = 73/88 (83%), Gaps = 6/88 (7%)
Strand=Plus/Plus
Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320
|||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| ||
Sbjct 103403 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAG 103460
Query 126321 -GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || ||||| ||||||
Sbjct 103461 GGCGTGGGTTCAAATCCCACTTCTGACA 103488
>seq1597
Length=49655
Score = 86.0 bits (94), Expect = 7e-12
Identities = 72/87 (83%), Gaps = 6/87 (7%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || |
Sbjct 22047 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 21990
Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348
||||||||| || ||||| |||||||
Sbjct 21989 CGTGGGTTCAAATCCCACTTCTGACAA 21963
>seq14813
Length=166712
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/85 (82%), Gaps = 2/85 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 109267 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 109210
Query 126325 GGGTTCGAACCCCACACCTGACAAA 126349
|||||| || |||||| ||| ||||
Sbjct 109209 GGGTTCAAATCCCACAGCTGTCAAA 109185
>seq6827
Length=69714
Score = 84.2 bits (92), Expect = 2e-11
Identities = 75/93 (81%), Gaps = 6/93 (6%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || |
Sbjct 63899 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGGG 63842
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATT 126354
||||||||| || ||||| ||||||| || ||
Sbjct 63841 CGTGGGTTCAAATCCCACTTCTGACAATTTTTT 63809
>seq1834
Length=38842
Score = 84.2 bits (92), Expect = 2e-11
Identities = 71/86 (83%), Gaps = 6/86 (7%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || |
Sbjct 32985 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 32928
Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347
||||||||| || ||||| ||||||
Sbjct 32927 CGTGGGTTCAAATCCCACTTCTGACA 32902
>seq11459
Length=56033
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 29899 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 29956
Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351
|||||| || |||||| ||| || |||
Sbjct 29957 GGGTTCAAATCCCACAGCTGTCATATT 29983
>seq6555
Length=224477
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 105476 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 105533
Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354
||| || |||||| ||| ||| || ||
Sbjct 105534 TTCAAATCCCACAGCTGTCAAGTTTTT 105560
>seq5715
Length=22656
Score = 82.4 bits (90), Expect = 8e-11
Identities = 69/84 (82%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 662 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 719
Query 126328 TTCGAACCCCACACCTGACAAATT 126351
||| || |||||| ||| ||| ||
Sbjct 720 TTCAAATCCCACAGCTGTCAATTT 743
>seq4046
Length=76662
Score = 82.4 bits (90), Expect = 8e-11
Identities = 79/99 (80%), Gaps = 3/99 (3%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 21009 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 20952
Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366
||| || |||||| ||| | ||| ||| || | |||||
Sbjct 20951 TTCAAATCCCACAGCTGTC-AATAATTTTTTGTTTTTTT 20914
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556674801532040
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