Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq8535 150 2e-31 seq6526 138 1e-27 seq22548 91.5 2e-13 seq10252 89.7 6e-13 seq13696 87.8 2e-12 seq11719 87.8 2e-12 seq6599 87.8 2e-12 seq6500 87.8 2e-12 seq3102 87.8 2e-12 seq1597 86.0 7e-12 seq14813 84.2 2e-11 seq6827 84.2 2e-11 seq1834 84.2 2e-11 seq11459 82.4 8e-11 seq6555 82.4 8e-11 seq5715 82.4 8e-11 seq4046 82.4 8e-11 >seq8535 Length=22056 Score = 150 bits (166), Expect = 2e-31 Identities = 502/771 (65%), Gaps = 14/771 (2%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA-CG 92982 ||||| || || ||||| |||||||| ||||| ||||| |||||||| | || || Sbjct 6428 CTATCCGCGACGAATTCGATGTACTGGCTCATCAGATCACCGTTCATTCCCACCAGGGCG 6487 Query 92983 TACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042 || || || |||||| || ||| ||| |||| || || || || | ||| | Sbjct 6488 CACGGG-AGCGCGTCGCACACGAACTCTCTCTCTATCGTCACCGCGTCGGCAACGATCCC 6546 Query 93043 TATTACTCTACTATTTGGTGGTTTTTGTACGACATAA--TTGTACATTAAGCACGCAAAG 93100 | |||| | | | | | ||| || | ||| | | ||| | | |||||| || Sbjct 6547 CCTGACTCGG-TCCTCGCTCGGTTT-GTGAGTCATCAACTCGTAGAGAAGGCACGCGAAA 6604 Query 93101 TCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAAC 93160 ||| || || || |||||||| || |||| ||| || ||| || | ||| || | Sbjct 6605 TCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAGACCCGGCATT 6664 Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACCTTC 93219 | || || || |||||||||||||| | ||| || || || || || || || || || Sbjct 6665 AACCCGCGCTTTTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGAAGATCCCCTC 6723 Query 93220 CACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTT 93279 |||| || ||||| | | | |||||| || | | || || | |||||| || Sbjct 6724 CACGCACGCGAATGCGATGAGCCTTTCGGCGAACGATTCTGA---ACCGTCGATCCACTT 6780 Query 93280 TAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA 93339 || ||||| | || ||||| | | ||||| | || ||||| |||| || ||| Sbjct 6781 CAACGCCCACTTTGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGTGGAAGAGGCG 6840 Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 | |||| |||| || ||||| | |||| | || |||||||| || || Sbjct 6841 GTTCTTCTCGGCCGAGTCCTTGATGTAGGATTCGAGCAGGAGGCTGTACATTTCGGAGTG 6900 Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459 || ||||| || || |||||||| |||||||| | ||||| | || || || || Sbjct 6901 GATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCTTCGGCGACTTGTACCTC 6960 Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 | |||| | |||| || || ||| || ||||| || || || || || || Sbjct 6961 CTTCATGAATCGGCCAGCGAGGTTCTCGAGGACGATGCCATCTGAGGCGGCGAAGAAGGC 7020 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTTATCCCAATCGGATAG 93576 | | || | || || || ||||| || | | || || |||||| | | | | Sbjct 7021 GAGGACGTGGGTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCATCCCAGTGGCGTTG 7080 Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 || | || ||||| ||||| || | ||||| ||||| ||||| || || |||||||| Sbjct 7081 GTCCTGCGACAGATCCACTTCCTCCGCCGTCCAGAACGACGCTTCGGCCTTCTTGTACAT 7140 Query 93637 ATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTT 93687 ||||| || | | || ||||| || || ||| || |||| ||||| Sbjct 7141 CTCCCAGATCTGCGGGTACTGAATCGGGAACATGCAGAATCGATCTGGGTT 7191 >seq6526 Length=28452 Score = 138 bits (152), Expect = 1e-27 Identities = 478/733 (65%), Gaps = 22/733 (3%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA-CG 92982 |||||||| | || || ||||||||| ||||| ||||| ||||| || | ||| || Sbjct 21722 CTATCAGCGATGAACTCGATGTACTGACTCATCAGATCACCGTTCATCCCCACTAGAGCG 21781 Query 92983 TACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042 || || || |||||| || ||| ||| |||| || | || || || | |||| | Sbjct 21782 CACGGG-AGCGCGTCGCACACGAACTCTCTCTCTATCTCCACCGCGTCGGCAACGATTCC 21840 Query 93043 TATTACTC--TACT-ATTTGGTGGTTTTTGTACGACATAA--TTGTACATTAAGCACGCA 93097 | |||| | || | | || |||| | ||| | | ||| | |||||||| Sbjct 21841 CCTGACTCGTTCCTCACTCAGT-----TTGTGAGTCATCAACTCGTAGAGCAAGCACGCG 21895 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 || ||| || || || |||||||| || |||| ||| || ||| || | ||| || Sbjct 21896 AAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTGAGACCCGGC 21955 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACC 93216 | | || || || |||||||||||||| | ||| || || || || || || || || Sbjct 21956 ATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGAAGATCCC 22014 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 || | | || || || | | | |||||| || | | || || | |||||| Sbjct 22015 CTCGAAGCACGCGAACGCGATGAGTCTTTCGGCGAACGATTCTGA---ACCGTCGATCCA 22071 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 ||| || ||||| | ||| ||||| | | ||||| | || ||||| |||| || || Sbjct 22072 TTTCAACGCCCACTTGGCCTTTTTTTCCACGCAAGGGATGGTCTCGATCGCGTGGAAGAG 22131 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | || |||| ||| || | ||||| | |||| | || |||||||| || Sbjct 22132 GCGGTCCTTCTCGGCCGGGTCCCTGATGTAGGATTCGAGCAGGAGGCTGTACATTTCGGA 22191 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA- 93455 |||| ||||| || || |||||||| |||||||| | ||||| | | || | Sbjct 22192 GTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCCCGCGCTTCGGCAACTTGTAC 22251 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 || ||| | ||| | | |||| || || ||| || || ||||| || || || | Sbjct 22252 CTCCTTCATGAAA-CGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGA 22310 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTTATCCCAATCGG 93572 | || | | || || || || || ||||| || | | || || ||||| | | Sbjct 22311 AGGCGAGGACGTGTTTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCGTCCCAGTGGC 22370 Query 93573 ATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGT 93632 | | || | || ||||| || || || | ||||| || || ||||| || || |||| Sbjct 22371 GTTGGTCCTGCGACAGATCCACCTCCTCCGCCGTCCAGAATGACGCTTCAGCCTTCTTGT 22430 Query 93633 ACATATCCCATAT 93645 |||| ||||| || Sbjct 22431 ACATCTCCCAGAT 22443 >seq22548 Length=141357 Score = 91.5 bits (100), Expect = 2e-13 Identities = 78/94 (83%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | ||||| Sbjct 79531 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTAAGAGAGCG 79590 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||| || ||||| ||||| |||| ||||| Sbjct 79591 TGGGTTCAAATCCCACTTCTGAC-AATTTTTATT 79623 >seq10252 Length=178548 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/91 (82%), Gaps = 6/91 (7%) Strand=Plus/Minus Query 126261 TTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA 126320 || |||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 79939 TTGCAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGA 79882 Query 126321 ----GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 79881 GAGGGCGTGGGTTCAAATCCCACTTCTGACA 79851 >seq13696 Length=36426 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 6/90 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 2581 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 2638 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||| || ||||| |||||| || Sbjct 2639 GCGTGGGTTCAAATCCCACTTCTGACATAT 2668 >seq11719 Length=43535 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 8544 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 8601 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 8602 GCGTGGGTTCAAATCCCACTTCTGACAA 8629 >seq6599 Length=35782 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 5850 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 5793 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| |||||| || Sbjct 5792 TTCAAATCCCACAGCTGTCAAATTGTT 5766 >seq6500 Length=129748 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | ||||| Sbjct 103074 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGCG 103015 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||| || ||||| ||||||| Sbjct 103014 TGGGTTCAAATCCCACTTCTGACAA 102990 >seq3102 Length=177675 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 103403 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAG 103460 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 103461 GGCGTGGGTTCAAATCCCACTTCTGACA 103488 >seq1597 Length=49655 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 22047 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 21990 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 21989 CGTGGGTTCAAATCCCACTTCTGACAA 21963 >seq14813 Length=166712 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 109267 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 109210 Query 126325 GGGTTCGAACCCCACACCTGACAAA 126349 |||||| || |||||| ||| |||| Sbjct 109209 GGGTTCAAATCCCACAGCTGTCAAA 109185 >seq6827 Length=69714 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/93 (81%), Gaps = 6/93 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 63899 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGGG 63842 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||||| || ||||| ||||||| || || Sbjct 63841 CGTGGGTTCAAATCCCACTTCTGACAATTTTTT 63809 >seq1834 Length=38842 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 32985 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 32928 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 32927 CGTGGGTTCAAATCCCACTTCTGACA 32902 >seq11459 Length=56033 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 29899 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 29956 Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351 |||||| || |||||| ||| || ||| Sbjct 29957 GGGTTCAAATCCCACAGCTGTCATATT 29983 >seq6555 Length=224477 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 105476 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 105533 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| ||| || || Sbjct 105534 TTCAAATCCCACAGCTGTCAAGTTTTT 105560 >seq5715 Length=22656 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 662 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 719 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 720 TTCAAATCCCACAGCTGTCAATTT 743 >seq4046 Length=76662 Score = 82.4 bits (90), Expect = 8e-11 Identities = 79/99 (80%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 21009 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 20952 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 ||| || |||||| ||| | ||| ||| || | ||||| Sbjct 20951 TTCAAATCCCACAGCTGTC-AATAATTTTTTGTTTTTTT 20914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556674801532040