Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq18541 158 2e-33
seq6340 150 4e-31
seq12782 129 1e-24
seq13828 91.5 3e-13
seq22550 89.7 1e-12
seq11913 87.8 4e-12
seq10050 87.8 4e-12
seq9953 87.8 4e-12
seq6495 87.8 4e-12
seq6417 87.8 4e-12
seq5691 87.8 4e-12
seq5278 87.8 4e-12
seq1545 87.8 4e-12
seq11781 86.0 1e-11
seq6394 86.0 1e-11
seq5894 86.0 1e-11
seq4392 86.0 1e-11
>seq18541
Length=33550
Score = 158 bits (174), Expect = 2e-33
Identities = 174/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 218582 TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACC 218641
|||| ||||| || || ||| || | |||||||| || | |||||||| |||
Sbjct 21906 TGGTTGATGGTCTGAAACCAGGTCAAAGGAAGATCCTTTTCTGTTCTTTCAAGCGAAACT 21965
Query 218642 TGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACC 218701
| ||| | ||| ||| || |||||||| |||||||||||||| || ||| | ||||
Sbjct 21966 TTGTTAAGGAAGCTAAAGTTGCTCAGTTCTCTGGTTATGTATCTGAGCATTCAGCTTACC 22025
Query 218702 ATCACGGTGAGCAGAGTCT-GCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGC 218760
|||| |||||||||||||| ||| || ||||| | || ||||||||||| |||||||||
Sbjct 22026 ATCATGGTGAGCAGAGTCTCGCA-AGTACCATTATTGGAATGGCACAGGATTATGTGGGC 22084
Query 218761 AGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTC 218809
|| |||||||| ||| |||| | || || || || ||||| ||||||
Sbjct 22085 AGCAACAACATAAACCTGCTTCAACCAAATGGCCAATTTGGAACTCGTC 22133
>seq6340
Length=78611
Score = 150 bits (166), Expect = 4e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 218582 TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACC 218641
|||| ||||| || || ||| || | |||||||| || | |||||| | |||
Sbjct 16807 TGGTTGATGGTCTGAAACCAGGTCAAAGGAAGATCCTTTTCTGTTCTTTCAAGAGAAACT 16866
Query 218642 TGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACC 218701
| || | ||| ||| || ||||||||||||||||||||||| || ||| | ||||
Sbjct 16867 TTGTAAAGGAAGCTAAAGTTGCTCAGTTTTCTGGTTATGTATCTGAGCATTCGGCTTACC 16926
Query 218702 ATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCA 218761
|||| |||||||||||||| || ||||| | || ||||||||||| ||||||||||
Sbjct 16927 ATCATGGTGAGCAGAGTCTCGCCAGTACCATTATTGGAATGGCACAGGATTATGTGGGCA 16986
Query 218762 GTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTC 218809
| |||||||| ||| | || | || || || || |||||| ||||||
Sbjct 16987 GCAACAACATAAACCTTCTTCAACCAAATGGCCAATTTGGTACTCGTC 17034
>seq12782
Length=73914
Score = 129 bits (142), Expect = 1e-24
Identities = 137/181 (76%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688
|||||||| | | | ||| | ||| ||| || |||||||| ||| |||||||||| ||
Sbjct 42370 TTCAAGCGAACCTTTGTTAAGGAAGCTAAAGTTGCTCAGTTCTCTTGTTATGTATCTGAG 42429
Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748
||| | |||||| | ||||| |||||||| | || ||||| | || |||||||||
Sbjct 42430 CATTCAGCTTACCATAATGGTGACCAGAGTCTCCCCAGTACCATTATTGGAATGGCACAG 42489
Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808
|| || |||||||| |||||||| ||| | || | || || || || ||||| ||||||
Sbjct 42490 GATTACGTGGGCAGCAACAACATAAACCTTCTTCAACCAAATGGCCAATTTGGCTCTCGT 42549
Query 218809 C 218809
|
Sbjct 42550 C 42550
>seq13828
Length=44362
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558
||| |||||| ||||||||| |||||||||| || ||||||| || |||||||||||||
Sbjct 7245 AGAAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 7186
Query 142559 CGAGCCCCAC 142568
||||||||||
Sbjct 7185 CGAGCCCCAC 7176
>seq22550
Length=273999
Score = 89.7 bits (98), Expect = 1e-12
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||
Sbjct 97512 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 97453
Query 142562 GCCCCAC 142568
|||||||
Sbjct 97452 GCCCCAC 97446
>seq11913
Length=14185
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 5446 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5387
Query 142563 CCCCAC 142568
||||||
Sbjct 5386 CCCCAC 5381
>seq10050
Length=78927
Score = 87.8 bits (96), Expect = 4e-12
Identities = 60/68 (88%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558
||| |||||| ||||||||| |||||||||| || ||||||| || |||||||||||||
Sbjct 8061 AGAAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 8002
Query 142559 CGAGCCCC 142566
||||||||
Sbjct 8001 CGAGCCCC 7994
>seq9953
Length=87991
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 68214 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 68155
Query 142563 CCCCAC 142568
||||||
Sbjct 68154 CCCCAC 68149
>seq6495
Length=167992
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 163245 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 163304
Query 142563 CCCCAC 142568
||||||
Sbjct 163305 CCCCAC 163310
>seq6417
Length=49675
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 40811 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 40752
Query 142563 CCCCAC 142568
||||||
Sbjct 40751 CCCCAC 40746
>seq5691
Length=70855
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 43163 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 43104
Query 142563 CCCCAC 142568
||||||
Sbjct 43103 CCCCAC 43098
>seq5278
Length=123541
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 111382 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 111441
Query 142563 CCCCAC 142568
||||||
Sbjct 111442 CCCCAC 111447
>seq1545
Length=66826
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 66518 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 66459
Query 142563 CCCCAC 142568
||||||
Sbjct 66458 CCCCAC 66453
>seq11781
Length=99180
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 5415 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5474
Query 142564 CCCAC 142568
|||||
Sbjct 5475 CCCAC 5479
>seq6394
Length=100723
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 63860 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 63801
Query 142564 CCCAC 142568
|||||
Sbjct 63800 CCCAC 63796
>seq5894
Length=21064
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 18895 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18954
Query 142564 CCCAC 142568
|||||
Sbjct 18955 CCCAC 18959
>seq4392
Length=29992
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 21240 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 21181
Query 142564 CCCAC 142568
|||||
Sbjct 21180 CCCAC 21176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027484906902361
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |