Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq18541 158 2e-33 seq6340 150 4e-31 seq12782 129 1e-24 seq13828 91.5 3e-13 seq22550 89.7 1e-12 seq11913 87.8 4e-12 seq10050 87.8 4e-12 seq9953 87.8 4e-12 seq6495 87.8 4e-12 seq6417 87.8 4e-12 seq5691 87.8 4e-12 seq5278 87.8 4e-12 seq1545 87.8 4e-12 seq11781 86.0 1e-11 seq6394 86.0 1e-11 seq5894 86.0 1e-11 seq4392 86.0 1e-11 >seq18541 Length=33550 Score = 158 bits (174), Expect = 2e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 218582 TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACC 218641 |||| ||||| || || ||| || | |||||||| || | |||||||| ||| Sbjct 21906 TGGTTGATGGTCTGAAACCAGGTCAAAGGAAGATCCTTTTCTGTTCTTTCAAGCGAAACT 21965 Query 218642 TGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACC 218701 | ||| | ||| ||| || |||||||| |||||||||||||| || ||| | |||| Sbjct 21966 TTGTTAAGGAAGCTAAAGTTGCTCAGTTCTCTGGTTATGTATCTGAGCATTCAGCTTACC 22025 Query 218702 ATCACGGTGAGCAGAGTCT-GCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGC 218760 |||| |||||||||||||| ||| || ||||| | || ||||||||||| ||||||||| Sbjct 22026 ATCATGGTGAGCAGAGTCTCGCA-AGTACCATTATTGGAATGGCACAGGATTATGTGGGC 22084 Query 218761 AGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTC 218809 || |||||||| ||| |||| | || || || || ||||| |||||| Sbjct 22085 AGCAACAACATAAACCTGCTTCAACCAAATGGCCAATTTGGAACTCGTC 22133 >seq6340 Length=78611 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 218582 TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACC 218641 |||| ||||| || || ||| || | |||||||| || | |||||| | ||| Sbjct 16807 TGGTTGATGGTCTGAAACCAGGTCAAAGGAAGATCCTTTTCTGTTCTTTCAAGAGAAACT 16866 Query 218642 TGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACC 218701 | || | ||| ||| || ||||||||||||||||||||||| || ||| | |||| Sbjct 16867 TTGTAAAGGAAGCTAAAGTTGCTCAGTTTTCTGGTTATGTATCTGAGCATTCGGCTTACC 16926 Query 218702 ATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCA 218761 |||| |||||||||||||| || ||||| | || ||||||||||| |||||||||| Sbjct 16927 ATCATGGTGAGCAGAGTCTCGCCAGTACCATTATTGGAATGGCACAGGATTATGTGGGCA 16986 Query 218762 GTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTC 218809 | |||||||| ||| | || | || || || || |||||| |||||| Sbjct 16987 GCAACAACATAAACCTTCTTCAACCAAATGGCCAATTTGGTACTCGTC 17034 >seq12782 Length=73914 Score = 129 bits (142), Expect = 1e-24 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 |||||||| | | | ||| | ||| ||| || |||||||| ||| |||||||||| || Sbjct 42370 TTCAAGCGAACCTTTGTTAAGGAAGCTAAAGTTGCTCAGTTCTCTTGTTATGTATCTGAG 42429 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748 ||| | |||||| | ||||| |||||||| | || ||||| | || ||||||||| Sbjct 42430 CATTCAGCTTACCATAATGGTGACCAGAGTCTCCCCAGTACCATTATTGGAATGGCACAG 42489 Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 || || |||||||| |||||||| ||| | || | || || || || ||||| |||||| Sbjct 42490 GATTACGTGGGCAGCAACAACATAAACCTTCTTCAACCAAATGGCCAATTTGGCTCTCGT 42549 Query 218809 C 218809 | Sbjct 42550 C 42550 >seq13828 Length=44362 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 ||| |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||| Sbjct 7245 AGAAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 7186 Query 142559 CGAGCCCCAC 142568 |||||||||| Sbjct 7185 CGAGCCCCAC 7176 >seq22550 Length=273999 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 97512 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 97453 Query 142562 GCCCCAC 142568 ||||||| Sbjct 97452 GCCCCAC 97446 >seq11913 Length=14185 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 5446 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5387 Query 142563 CCCCAC 142568 |||||| Sbjct 5386 CCCCAC 5381 >seq10050 Length=78927 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 ||| |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||| Sbjct 8061 AGAAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 8002 Query 142559 CGAGCCCC 142566 |||||||| Sbjct 8001 CGAGCCCC 7994 >seq9953 Length=87991 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 68214 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 68155 Query 142563 CCCCAC 142568 |||||| Sbjct 68154 CCCCAC 68149 >seq6495 Length=167992 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 163245 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 163304 Query 142563 CCCCAC 142568 |||||| Sbjct 163305 CCCCAC 163310 >seq6417 Length=49675 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 40811 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 40752 Query 142563 CCCCAC 142568 |||||| Sbjct 40751 CCCCAC 40746 >seq5691 Length=70855 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 43163 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 43104 Query 142563 CCCCAC 142568 |||||| Sbjct 43103 CCCCAC 43098 >seq5278 Length=123541 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 111382 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 111441 Query 142563 CCCCAC 142568 |||||| Sbjct 111442 CCCCAC 111447 >seq1545 Length=66826 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 66518 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 66459 Query 142563 CCCCAC 142568 |||||| Sbjct 66458 CCCCAC 66453 >seq11781 Length=99180 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 5415 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5474 Query 142564 CCCAC 142568 ||||| Sbjct 5475 CCCAC 5479 >seq6394 Length=100723 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 63860 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 63801 Query 142564 CCCAC 142568 ||||| Sbjct 63800 CCCAC 63796 >seq5894 Length=21064 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 18895 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18954 Query 142564 CCCAC 142568 ||||| Sbjct 18955 CCCAC 18959 >seq4392 Length=29992 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 21240 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 21181 Query 142564 CCCAC 142568 ||||| Sbjct 21180 CCCAC 21176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027484906902361