Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6526 241 2e-58 seq3997 235 1e-56 seq8535 230 4e-55 seq13045 116 7e-21 >seq6526 Length=28452 Score = 241 bits (266), Expect = 2e-58 Identities = 507/745 (68%), Gaps = 17/745 (2%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || ||| | | |||||| |||||||||||||| | || |||||| || Sbjct 22459 GATCCAGTACCCGCAGATCTGGGAGATGTACAAGAAGGCTGAAGCGTCATTCTGGACGGC 22400 Query 42344 CGAGGAGATTGACCTGGCCAAGGAC-ACGGCCGGCTGGGA---GTCACTGTCTGAGAACG 42399 |||||| | || ||| | ||||| | ||| |||||| | | || | | ||| Sbjct 22399 GGAGGAGGTGGATCTGTCGCAGGACCAACGCCA-CTGGGACGAGGCCCTCACCGCCGACG 22341 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | ||| ||| ||||| || | || ||||||||||||||||| |||||||| ||| | Sbjct 22340 AGAAGCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCG 22281 Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTT--GAGGCGCGCTGCTTCTA 42517 ||||||| ||| | | |||||||| ||||| || | || || ||||| |||||| Sbjct 22280 AGAACCTCGCCGGCCGTTTCATGAAGGAGGTACA--AGTTGCCGAAGCGCGGGCCTTCTA 22223 Query 42518 CGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACAC 42577 ||||||||| || ||||| |||||| | ||||| || ||||| | |||||| | | Sbjct 22222 CGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACAGCCTCCTGCTCGAATC 22163 Query 42578 GTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTG 42637 |||||| ||| || | |||| || | || ||| | || || ||||| || || || Sbjct 22162 CTACATCAGGGACCCGGCCGAGAAGGACCGCCTCTTCCACGCGATCGAGACCATCCCTTG 22103 Query 42638 CATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGG 42697 | | | || ||||| | |||||| | || |||||||| || | || | |||||| Sbjct 22102 CGTGGAAAAAAAGGCCAAGTGGGCGTTGAAATGGATCGACGGTTCAGA---ATCGTTCGC 22046 Query 42698 CGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTC 42757 ||| || || | || || | | ||||||| ||||||||||| || |||| | | Sbjct 22045 CGAAAGACTCATCGCGTTCGCGTGCTTCGAGGGGATCTTCTTCTCCGGAAGCTTCTGCGC 21986 Query 42758 CATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 || || |||||||| || | || ||||| || ||||||||||||||||| || || Sbjct 21985 GATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGTCTCACCTTCTCGAACGAGCTGAT 21926 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAG 42877 | | |||||||| |||| | || || || ||| | || | |||| | | Sbjct 21925 CTCGCGAGACGAGGGCTTGCACTGCGATTTCGCGTGCTTGCTCT--ACGAG-TTGATGAC 21869 Query 42878 GCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAA 42937 ||||| | |||| || ||| ||| ||| | | || || |||||||| |||| Sbjct 21868 TCACAAACTGAGTGAGGAACGAGTCAGGGGAATCGTTGCCGACGCGGTGGAGATAGAGAG 21809 Query 42938 GGAGTTCCTCACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGT 42996 |||||| | | |||| |||||| | || || || |||||| || || ||| Sbjct 21808 AGAGTTCGTGTGCGACGCGCT-CCCGTGCGCTCTAGTGGGGATGAACGGTGATCTGATGA 21750 Query 42997 GCAAGTACATCCAGTACGTCGCCGA 43021 | |||||||| ||| | |||| || Sbjct 21749 GTCAGTACATCGAGTTCATCGCTGA 21725 >seq3997 Length=108068 Score = 235 bits (260), Expect = 1e-56 Identities = 495/732 (68%), Gaps = 11/732 (2%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || ||| | | |||||| |||||||||||||| || || |||||| || Sbjct 90351 GATCCAGTACCCGTAGATCTGGGAGATGTACAAGAAGGCAGAGGCGTCGTTCTGGACGGC 90292 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCA---CTGTCTGAGAACGA 42400 |||||| | ||||| || ||| | |||||| | || | | |||| Sbjct 90291 GGAGGAGGTGGACCTCTCCGCTGACCTTCGCCACTGGGACCAAACCCTAACCGCCGACGA 90232 Query 42401 AAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGA 42460 | | ||| || || | || ||||||||||| ||||| |||||||| ||| || Sbjct 90231 GAGGCACTTCATCTCCCACGTCCTCGCCTTCTTCGCAGCCTCCGACGGCATCGTCCTCGA 90172 Query 42461 GAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGG 42520 ||| || ||| | | |||||||| ||||| ||| | |||||| ||| ||||| || Sbjct 90171 GAATCTCGCCGGCCGCTTCATGAAGGAGGTCCAGGTCGCTGAGGCCCGCGCTTTCTATGG 90112 Query 42521 CTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTA 42580 ||||||||| || || |||||| | ||||| ||| ||||| | || ||| | | || Sbjct 90111 CTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAATCCTA 90052 Query 42581 CATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCAT 42640 |||| ||| || |||| || | || ||| | || || ||||| || || ||| | Sbjct 90051 CATCAAGGACTCCTCCGAGAAGCACCGCCTCTTCCACGCAATCGAGACCATCCCTTGCGT 89992 Query 42641 CAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGA 42700 ||||||||| | ||||| || || |||||||| | | || | |||||| ||| Sbjct 89991 GGTGAAGAAGGCCAAGTGGGCCCTGAAATGGATCGACGGCTCAGA---ATCGTTCGCCGA 89935 Query 42701 GAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCAT 42760 | | || || || || | ||| ||||| ||||||||||| || |||| | | || Sbjct 89934 GCGTCTCGTGGCGTTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGAAGCTTCTGCGCGAT 89875 Query 42761 CTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAG 42820 || ||||||||| || | || ||||| ||||| || ||||||||||| || ||| Sbjct 89874 ATTTTGGCTCAAGAAGCGCGGGTTAATGCCGGGACTGACTTTCTCGAACGAGCTAATCTC 89815 Query 42821 CAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA 42880 | |||||||| || || | ||||| || ||| | |||| |||| | || || || Sbjct 89814 GCGAGACGAGGGCCTTCACTGCGACTTCGCGTGCTTGCTGT--ACGAGTTA-CTGAGTCA 89758 Query 42881 CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940 |||| ||||||| || ||| ||| | | || || ||||| || |||| || Sbjct 89757 GAAGCTGAGCGAGGAGCGATTCAGGGGTATCGTGAGCGACGCGGTGGATATAGAGAGAGA 89698 Query 42941 GTTCCTCACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCA 42999 |||| | | | ||| ||||| ||||||| || |||||| || || |||||| Sbjct 89697 GTTCGTGTGCGACGCTCTG-CCGTGCGCCCTGGTGGGTATGAACGGTGATCTGATGTGCC 89639 Query 43000 AGTACATCCAGT 43011 ||||||| ||| Sbjct 89638 GGTACATCGAGT 89627 >seq8535 Length=22056 Score = 230 bits (254), Expect = 4e-55 Identities = 499/738 (68%), Gaps = 13/738 (2%) Strand=Plus/Minus Query 42289 AGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGG 42348 || ||| | | |||||| |||||||||||||| | || |||||| || |||| Sbjct 7160 AGTACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAAGCGTCGTTCTGGACGGCGGAGG 7101 Query 42349 AGATTGACCTGGCCAAGGAC-ACGGCCGGCTGGGA---GTCACTGTCTGAGAACGAAAAG 42404 | | || ||| | ||||| | ||| |||||| | | || | | |||| ||| Sbjct 7100 AAGTGGATCTGTCGCAGGACCAACGCCA-CTGGGATGAGGCCCTCACCGCCGACGAGAAG 7042 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 ||| ||| || | || ||||||||||||||||| || ||||| ||| |||||| Sbjct 7041 CACTTCATCACCCACGTCCTCGCCTTCTTCGCCGCCTCAGATGGCATCGTCCTCGAGAAC 6982 Query 42465 CTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTC 42524 || || | | |||||||| ||||| || | || |||||| ||||||||||||| Sbjct 6981 CTCGCTGGCCGATTCATGAAGGAGGTACAAGTCGCCGAAGCGCGCGCCTTCTACGGCTTC 6922 Query 42525 CAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATC 42584 || || ||||| |||||| | ||||| || ||||| | |||||| | | |||||| Sbjct 6921 CAAATCGCCATCGAGAACATCCACTCCGAAATGTACAGCCTCCTGCTCGAATCCTACATC 6862 Query 42585 CTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAG 42644 ||| | | |||| ||| | || ||| | || || ||||| | || ||| | | Sbjct 6861 AAGGACTCGGCCGAGAAGAACCGCCTCTTCCACGCGATCGAGACCGTCCCTTGCGTGGAA 6802 Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGG 42704 || ||||| | |||||| | || |||||||| || | || | |||||| ||| ||| Sbjct 6801 AAAAAGGCAAAGTGGGCGTTGAAGTGGATCGACGGTTCAGA---ATCGTTCGCCGAAAGG 6745 Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 || | || || | ||| ||||| ||||||||||| || |||| | | || || Sbjct 6744 CTCATCGCATTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGAAGCTTCTGCGCGATATTT 6685 Query 42765 TGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||||||| || | || ||||| || ||||| ||||||||||| || ||| | Sbjct 6684 TGGCTCAAAAAGCGCGGGTTAATGCCGGGTCTCACTTTCTCGAACGAGCTGATCTCGCGA 6625 Query 42825 GACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAG 42884 |||||||| |||| | || || || ||||| || | |||| | | ||||| Sbjct 6624 GACGAGGGCTTGCACTGCGATTTCGCGTGCCTTCTCT--ACGAG-TTGATGACTCACAAA 6568 Query 42885 CCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 || |||| || ||| ||| ||| | | || || ||| ||| |||| |||||| Sbjct 6567 CCGAGCGAGGACCGAGTCAGGGGGATCGTTGCCGACGCGGTGACGATAGAGAGAGAGTTC 6508 Query 42945 CTCACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTA 43003 | | |||| |||||| ||||||| || |||||| || || ||| || |||| Sbjct 6507 GTGTGCGACGCGCT-CCCGTGCGCCCTGGTGGGAATGAACGGTGATCTGATGAGCCAGTA 6449 Query 43004 CATCCAGTACGTCGCCGA 43021 |||| | | |||||| || Sbjct 6448 CATCGAATTCGTCGCGGA 6431 >seq13045 Length=6999 Score = 116 bits (128), Expect = 7e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| ||| ||||||| ||| | | |||||| Sbjct 1225 CTAGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCAAGAACCTCGCCGGCCGCTTCATG 1166 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || ||||| ||| | ||||| ||| |||||||||||||||||| ||| | |||||| Sbjct 1165 AAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCGTCGAGAAC 1106 Query 42543 GTGCACTCTGAGGTGTA 42559 | ||||| ||| |||| Sbjct 1105 ATCCACTCCGAGATGTA 1089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944023778902960