Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq7849 134 1e-26 seq17719 95.1 1e-14 seq5804 89.7 4e-13 seq892 87.8 1e-12 seq22277 86.0 5e-12 seq4434 86.0 5e-12 seq19262 82.4 6e-11 seq4573 82.4 6e-11 >seq7849 Length=122270 Score = 134 bits (148), Expect = 1e-26 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || |||||||||||||||| ||| || || ||||||||| |||||||| |||||| Sbjct 79472 CCGCCCCTCAGCCGCAGCACCAAATGTAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCC 79531 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| | || ||||||||||| || || || ||||| | ||| |||||| || Sbjct 79532 AGAGTCCGCCCATCCTCCAATTGCTTCCCTGCGAAGATCAGCCTCTGTTGATCCGGTGGA 79591 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGAT-TCGC 34078 | | |||||| ||| ||| ||| ||| | | | ||| | |||||| || | || Sbjct 79592 ATCCCCTCTTTATCCTGAATCTTTGCCTTCACGTTA-TCAATCGTATCAG-AGCTCTCAA 79649 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 |||| ||| ||||| || |||||||| ||||| ||||||||||||||| Sbjct 79650 CCTCGAGCGTGATTGTCTTGCCGGTTAGGGTTTTGACAAAGATTTGCATT 79699 >seq17719 Length=101630 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| || || |||||||| || || || ||||||||| ||||||||||| ||| Sbjct 79455 CCGCCTCGGAGGCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAATCGGCC 79396 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| || | ||||| ||||| || || || |||||||| ||| ||| Sbjct 79395 AAAGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGA 79336 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | | ||| |||||| || || ||| | | | | || | || ||| Sbjct 79335 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 79276 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 |||| ||||| || || || ||||| |||||||| ||||| |||||||| Sbjct 79275 TCGAGGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 79226 >seq5804 Length=153150 Score = 89.7 bits (98), Expect = 4e-13 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 |||||| || | || || ||||| ||||| || || |||||||||||||||||| || Sbjct 33476 GAAACCACCACGAAGACGAAGCACAAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTC 33417 Query 33957 TGCCAATTGTCGCTC-GTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||||| ||| || ||| |||| ||||| || ||||||||||| | ||||||||| Sbjct 33416 AGCCAAA-GTCCTTCCGTCCTCCAGCTGCTTCCCAGCAAATATCAGCCTCTGCTGATC 33360 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||| || || |||||||| || || ||| || |||||||||||||| || || Sbjct 32560 CCTCCTCTGAGACGGAGCACCAGGTGGAGGGTGGATTCTTTCTGAATGTTGTAGTCGGCG 32501 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| || | ||||| |||||||| || || | |||||||||| || Sbjct 32500 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGATCCGGAGGG 32441 Query 34021 ACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 32440 ATTCCCTCCTTGTCC 32426 >seq892 Length=123481 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || |||||||| || ||||| ||||||||| |||||||| || || Sbjct 88257 CCTCCGCGAAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 88316 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| || || ||||| || |||||||||||||| ||| || Sbjct 88317 AGGGTGCGACCGTCCTCCAGCTGTTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGAGGA 88376 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCG 34077 | || ||||||||| || || ||| || | || | | |||| ||||| Sbjct 88377 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTG---TCGATGGTGTCAGATGATTCA 88433 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || | ||||| || || || ||||| |||||||| ||||| ||||| || Sbjct 88434 ACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 88486 >seq22277 Length=3790 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 33937 TCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAAT 33996 |||||||| ||||||||||| || | || | || |||| || ||||||||||| Sbjct 1950 TCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAAG 1891 Query 33997 ATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGG 34054 ||||| | |||||||||| || | | ||| |||||| ||||||| ||| || | Sbjct 1890 ATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGAATTTTTGCCTTGACATTG 1831 Query 34055 AACTC-ACACTATCAGTAGATTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTC 34113 || | |||||| |||| |||| || || ||||| ||||| || ||||| Sbjct 1830 ---TCGATGGTATCAGAGCTTTCGACCTCGAGGGTAATCGTTTTCCCGGTGAGGGTTTTG 1774 Query 34114 ACAAAGATTTGCAT 34127 |||||||| ||||| Sbjct 1773 ACAAAGATCTGCAT 1760 >seq4434 Length=125464 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||||| ||||| || |||||||||||||| || || ||| Sbjct 10252 CCACCACGCAGGCGCAGCACCAAGTGAAGGGTCGATTCCTTCTGAATGTTATAGTCGGCC 10311 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || ||| | || ||||| ||||| || ||||| ||||| | |||||| ||| || Sbjct 10312 AAGGTACGCCCATCCTCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCCGGTGGA 10371 Query 34021 ACGCTCTCTTTGTCC 34035 | | |||||||||| Sbjct 10372 ATTCCCTCTTTGTCC 10386 >seq19262 Length=114341 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| || ||||| ||||| || ||||||||| |||||||| |||||| Sbjct 46519 CCACCCCTAAGCCTCAAAACCAGGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCTGCC 46578 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| | || |||||||| ||||||||||| |||| | ||| ||||| Sbjct 46579 AGAGTTCGGCCATCTTCCAATTGTTTGCCGGCAAAAATCAACCTCTGTTGATC 46631 >seq4573 Length=120409 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| || ||||| ||||| || ||||||||| || ||||| |||||| Sbjct 8033 CCACCCCTAAGCCTCAAAACCAGGTGAAGTGTTGACTCCTTCTGGATATTGTAGTCTGCC 7974 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| | || |||||||| |||||||||||||||| | ||| ||||| Sbjct 7973 AGAGTTCGGCCATCTTCCAATTGTTTGCCGGCAAATATCAACCTCTGTTGATC 7921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396933091790242