Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3997 89.7 1e-12 seq1709 84.2 5e-11 >seq3997 Length=108068 Score = 89.7 bits (98), Expect = 1e-12 Identities = 371/575 (65%), Gaps = 14/575 (2%) Strand=Plus/Minus Query 242869 TCTGCAT--TCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAA 242926 ||||||| |||| |||||||| ||| | || ||||| ||||| |||||||||| ||| Sbjct 90364 TCTGCATGTTCCCGATCCAGTACCCGTAGATCTGGGAGATGTACAAGAAGGCAGAGGCGT 90305 Query 242927 CCTTTTGGACCACCGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAA 242984 | || ||||| | ||||| || ||||| ||| ||| | | ||||| | | | Sbjct 90304 CGTTCTGGACGGCGGAGGAGGTGGACCTCTC--CGCTGACCTTCGCCACTGGGACCAAAC 90247 Query 242985 ACTCAATGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGA 243044 || | | |||||| | || |||||| ||| | || | || ||||||| |||||| Sbjct 90246 CCTAACCGCCGACGAGAGGCACTTCATCTCCCACGTCCTCGCCTTCTTCGCAGCCTCCGA 90187 Query 243045 TGGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGG 243103 || || || | || ||||| || | || ||| | ||| || ||| | |||| Sbjct 90186 CGGCATCGTCCTCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGGTCCAGGTCGCTGAGG 90128 Query 243104 CACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTC 243163 | || || |||| | ||| | | ||| ||||| || || || | Sbjct 90127 CCCGCGCTTTCTATGGCTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGCC 90068 Query 243164 TTCTTATCGACGCGCTTATTTCAGATGAA-CAAGAGCGAA--ACGAGCTTTTCGACGCCA 243220 | || |||| | || ||| | || | | ||| || || ||| |||| | Sbjct 90067 TCCTCCTCGAATCC--TACATCA-AGGACTCCTCCGAGAAGCACCGCCTCTTCCACGCAA 90011 Query 243221 TCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCG 243280 |||| | ||| || || || ||||| || ||||| | ||| ||| | || | Sbjct 90010 TCGAGACCATCCCTTGCGTGGTGAAGAAGGCCAAGTGGGCCCTGAAATGGATCGACGGCT 89951 Query 243281 GTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCG 243340 |||| || || ||||||||||| || | | |||||| || || || | || |||| Sbjct 89950 CAGAATCGTTCGCCGAGCGTCTCGTGGCGTTCGCGTGCGTGGAGGGGATCTTCTTCTCCG 89891 Query 243341 GGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGT 243400 | || |||||||| || |||||||| ||| || | ||||| || || | | | Sbjct 89890 GAAGCTTCTGCGCGATATTTTGGCTCAAGAAGCGCGGGTTAATGCCGGGACTGACTTTCT 89831 Query 243401 CTAACGAGTTCATCAGTCGCGACGAGGGCCTTCAC 243435 | |||||| | ||| || ||||||||||||||| Sbjct 89830 CGAACGAGCTAATCTCGCGAGACGAGGGCCTTCAC 89796 >seq1709 Length=42826 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 68691 AGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGAT 68750 ||||||||||||| |||| ||| ||||| || ||||||||| | |||||||| || || Sbjct 14516 AGAGATTGGGGATTTGCGGGGGACTACGTGGAGGCAATGTGGCTTATGCTGCAGCAGGAA 14457 Query 68751 ACTCCGGATGACTATGTGATTGCAAC 68776 ||||| |||||||| ||| | || || Sbjct 14456 ACTCCCGATGACTACGTGGTGGCGAC 14431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102502414901350