Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3997 172 7e-38 seq8535 134 2e-26 seq6526 131 2e-25 seq838 86.0 7e-12 seq18474 84.2 3e-11 >seq3997 Length=108068 Score = 172 bits (190), Expect = 7e-38 Identities = 388/571 (68%), Gaps = 23/571 (4%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| |||||||||| |||||| ||||| || |||||||| | ||| ||||| |||||| Sbjct 89496 GTACTCCCCAACCCTCTTCTCAAAGAAATTCGTCTTCCCCTGCAAACTGATCAGCTCCAT 89555 Query 125818 AAAATCAAATGGGTTCTTTG-AGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGAC 125876 | ||||| || |||| || | ||||| || ||||| | | || | Sbjct 89556 CCAGTCAAACGGATTCTGTGCACCGTAAAATTTCCCACATCCCAA-CGCAACCAAAAGCC 89614 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 ||||| || |||| |||||| ||||| ||| ||||||||| | ||| | Sbjct 89615 TATCCGCCACAAACTCGATGTACCGGCACATCAGATCACCGTTCATACCCACCAGGGCGC 89674 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG- 125995 | || || ||||| | | |||| | |||| || ||||| || || | |||||| | Sbjct 89675 ACGGCAGAGCGTCGCACACGAACTCTCTCTCTATATCCACCGCGTCGCTCACGATACCCC 89734 Query 125996 TGAATGGTGTCCACCC-CAGGTCTATTGCGCA--AAGTCTTGAAG--AGTTCCACGGCAA 126050 ||||| | ||| | | ||| | | | | || || || | || || |||| | | Sbjct 89735 TGAATCGC-TCCTCGCTCAGCT-TCTGACTCAGTAACTCGTACAGCAAG---CACG-CGA 89788 Query 126051 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCA 126110 | || ||| || |||||||| || ||||| || || |||||||| |||||| |||| Sbjct 89789 AGTCGCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAGAAAGTCAGTCCCGGCA 89848 Query 126111 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCT 126170 | | || |||||||| | ||| || ||||| || || || ||||||||||| |||| Sbjct 89849 TTAACCCGCGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCT 89908 Query 126171 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG---TGTCAAACC 126227 |||| ||||||||||| | ||||||||| || || ||| | || ||| | || Sbjct 89909 CCACGCACGCGAACGCCACGAGACGCTCGGCGAA------CGATTCTGAGCCGTCGATCC 89962 Query 126228 ACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA 126287 | |||| ||||||| ||||| ||| | | || |||| ||||| ||| || | |||| Sbjct 89963 ATTTCAGGGCCCACTTGGCCTTCTTCACCACGCAAGGGATGGTCTCGATTGCGTGGAAGA 90022 Query 126288 GTTCCTTCTTTTCTGATGGATCTTTGATGTA 126318 | | ||| || || | || |||||||| Sbjct 90023 GGCGGTGCTTCTCGGAGGAGTCCTTGATGTA 90053 >seq8535 Length=22056 Score = 134 bits (148), Expect = 2e-26 Identities = 376/568 (66%), Gaps = 17/568 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| |||||||||| |||||| || || || |||||||| | || ||||| |||||| Sbjct 6310 GTACTCCCCAACCCTCTTCTCAAAAAAATTGGTCTTCCCCTGTAAACTGATCAGCTCCAT 6369 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGTTGGCAC-CCCAATCTGTTTGAGGAGA 125875 |||| || ||||| || || | | || ||| ||| | | | || Sbjct 6370 CCAATCGAACGGGTTGG--GAACACCGTACATCTTACCACACCCGAGCGCACCCAAAAGC 6427 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 | ||||| |||| | || ||||||| |||| ||| |||||| || | ||| Sbjct 6428 CTATCCGCGACGAATTCGATGTACTGGCTCATCAGATCACCGTTCATTCCCACCAGGGCG 6487 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || ||||||||||| | | |||| | |||| || ||| || || ||||| | Sbjct 6488 CACGGGAGCGCGTCGCACACGAACTCTCTCTCTATCGTCACCGCGTCGGCAACGATCCCC 6547 Query 125996 -TGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAAACT 126053 ||| | | |||| | | ||| | | || || | |||| |||| ||| | Sbjct 6548 CTGACTCG-GTCCTCGCTCGGTTTGTGAGTCATCAACTCGTAGAGAAGGCACGCGAAA-T 6605 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | ||| | |||||||| || ||||| || || |||||||| || || ||||| | Sbjct 6606 CGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAGACCCGGCATTA 6665 Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173 || ||||| || | ||| || ||||| || || || ||||||||||| ||||||| Sbjct 6666 ACCCGCGCTTTTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCCA 6725 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG---TGTCAAACCACT 126230 | |||||||| || | ||| | || || || ||| | || ||| | ||||| Sbjct 6726 CGCACGCGAATGCGATGAGCCTTTCGGCGAA------CGATTCTGAACCGTCGATCCACT 6779 Query 126231 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTT 126290 ||| |||||||| |||||||| || | || |||||||||| |||||| | ||||| Sbjct 6780 TCAACGCCCACTTTGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGTGGAAGAGGC 6839 Query 126291 CCTTCTTTTCTGATGGATCTTTGATGTA 126318 ||||| || | | || |||||||| Sbjct 6840 GGTTCTTCTCGGCCGAGTCCTTGATGTA 6867 >seq6526 Length=28452 Score = 131 bits (144), Expect = 2e-25 Identities = 562/875 (64%), Gaps = 24/875 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| |||||||||| |||||| || || || |||||||| | || || || |||||| Sbjct 21604 GTACTCCCCAACCCTCTTCTCAAAAAAATTGGTCTTCCCCTGTAAACTAATCAGCTCCAT 21663 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC-CCCAATCTGTTTGAGGAGAC 125876 ||||||| ||||| | | | | || ||| ||||| | | ||| | Sbjct 21664 CCAATCAAACGGGTTGGAA-ACACCGTACATCTTCCCACACCCAAGCGCACCAAAGAGCC 21722 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 ||| | || | |||| ||||||| | |||| ||| |||||| || | || | Sbjct 21723 TATCAGCGATGAACTCGATGTACTGACTCATCAGATCACCGTTCATCCCCACTAGAGCGC 21782 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG- 125995 | ||||||||||| | | |||| | |||| || ||||| || || ||||| | Sbjct 21783 ACGGGAGCGCGTCGCACACGAACTCTCTCTCTATCTCCACCGCGTCGGCAACGATTCCCC 21842 Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAAACTC 126054 ||| | || ||| | | || | | || || | |||| |||| ||| || Sbjct 21843 TGACTCGT-TCCTCACTCAGTTTGTGAGTCATCAACTCGTAGAGCAAGCACGCGAAA-TC 21900 Query 126055 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAG 126114 ||| | |||||||| || ||||| || || ||||||||| || || ||||| | Sbjct 21901 GCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTGAGACCCGGCATTAA 21960 Query 126115 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 || ||||| || | ||| || ||||| || || || ||||||||||| ||||| | Sbjct 21961 CCCGCGCTTTTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCGAA 22020 Query 126175 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG---TGTCAAACCACTT 126231 ||||||||||| | ||| | || || || ||| | || ||| | ||| || Sbjct 22021 GCACGCGAACGCGATGAGTCTTTCGGCGAA------CGATTCTGAACCGTCGATCCATTT 22074 Query 126232 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTC 126291 || |||||||| |||||||| || | || |||| ||||| |||||| | ||||| Sbjct 22075 CAACGCCCACTTGGCCTTTTTTTCCACGCAAGGGATGGTCTCGATCGCGTGGAAGAGGCG 22134 Query 126292 CTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTG 126351 | ||| || | || || ||||||| || | || || ||||| ||| Sbjct 22135 GTCCTTCTCGGCCGGGTCCCTGATGTAGGATTCGAGCAGGAGGCTGTACATTTCGGAGTG 22194 Query 126352 GACCATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACC 126409 || ||| ||||| || | ||||||| | ||||||||| | |||||| Sbjct 22195 GA--TGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCCCGCGCTTCGGCAACTTGTACC 22252 Query 126410 TCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAAC 126469 || | ||| | || ||||| | || || || ||||| | || || || Sbjct 22253 TCCTTCATGAAACGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAG 22312 Query 126470 GCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTC---TTCCAGTCGTCA 126526 || |||| | || ||||| | || || | || | |||| | | ||||| | Sbjct 22313 GCGAGGACGTGTTTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCGTCCCAGTGGCGT 22372 Query 126527 AGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA-ATTGCTCATTTGAGCCTTCTTATA 126585 | |||| ||| ||||| ||||||||||| ||||| | || | || ||||||||| || Sbjct 22373 TGGTCCTGCGACAGATCCACCTCCTCCGCCGTCCAGAATG-ACGCTTCAGCCTTCTTGTA 22431 Query 126586 GAGTTCCCAAAGGTGGGGATACTTCAGGGGGAACA 126620 | ||||| | || || |||| | ||||||| Sbjct 22432 CATCTCCCAGATCTGCGGGTACTGGATCGGGAACA 22466 >seq838 Length=146170 Score = 86.0 bits (94), Expect = 7e-12 Identities = 189/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| ||||||||||| ||||| || ||||| || || || || | ||||||||| | Sbjct 102974 AAACCCATCCATCTCTGTCAACAGCTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 103031 Query 10936 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | | | | ||||| | | ||| | || || || ||||| ||||| || || || || Sbjct 103032 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCAACCGCATCAATCTCATCTATAAACACAATG 103091 Query 10994 CACGGTTGATTTTCACGG-GCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 || || | |||| || || ||||| | || | |||||| || || ||||| Sbjct 103092 CAAGGC-GCTTTTGACTTCGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCCCCCACACC 103150 Query 11053 CACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACC 11112 |||||||| ||| ||||| | | || | |||| | ||| || ||| || ||| || Sbjct 103151 CACAAACAATTCTACAAATTCTGATGCAGCACATGAAAAGAATGGCACGCCGGCTTCTCC 103210 Query 11113 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || | || | || | ||||||||||| || ||||| Sbjct 103211 GGCCACCGCCCTTGCCAACAGGGTCTTCCCGGTACCAGG 103249 >seq18474 Length=70118 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 8649 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTCA 8708 || ||||| || |||| || |||| || ||| ||| ||||||||||||||||| ||| Sbjct 12124 AACTACCGCGAGGCCTACGGGATCTTCGCCTGCAACGGCATTCTCTTCAACCACGAATCA 12065 Query 8709 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACC 8747 ||||| ||||| | |||||||||| |||||||||| Sbjct 12064 CCCCGGCGTGGTGAGAATTTCGTGACCCGGAAGATCACC 12026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597154076430680