Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq19972 123 3e-23 seq17719 123 3e-23 seq8351 123 3e-23 seq26701 107 2e-18 seq7849 102 9e-17 seq5804 95.1 1e-14 seq2905 93.3 5e-14 seq22277 91.5 2e-13 seq21627 91.5 2e-13 seq12303 89.7 6e-13 seq892 87.8 2e-12 seq2938 86.0 7e-12 seq11833 82.4 8e-11 >seq19972 Length=4408 Score = 123 bits (136), Expect = 3e-23 Identities = 158/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| |||| || |||||| || || ||||| || |||| |||||| |||| || Sbjct 4020 CACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTCCGGCCGTCCTC 3961 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || ||||| ||||| ||||||||||| | ||| | | |||||||||| Sbjct 3960 GAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTG 3901 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| || |||| ||| | | | ||||| || || || |||| || ||||| | Sbjct 3900 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTTATGGTCT 3842 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 | |||||||| || || || ||||| ||||||||| Sbjct 3841 TACCCGTTAGGGTTTTCACGAAGATCTGCATTTTC 3807 >seq17719 Length=101630 Score = 123 bits (136), Expect = 3e-23 Identities = 158/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| |||| || |||||| || || |||||||| |||| |||||| |||| || Sbjct 79438 CACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTCCGGCCGTCCTC 79379 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || ||||| ||||| ||||||||||| | || | | |||||||||| Sbjct 79378 GAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTG 79319 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| || |||| ||| | | | ||||| || || || |||| || ||||| | Sbjct 79318 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTTATGGTCT 79260 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 | |||||||| || || || ||||| ||||||||| Sbjct 79259 TACCCGTTAGGGTTTTCACGAAGATCTGCATTTTC 79225 >seq8351 Length=11701 Score = 123 bits (136), Expect = 3e-23 Identities = 158/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| |||| || |||||| || || ||||| || |||| |||||| |||| || Sbjct 2864 CACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTCCGGCCGTCCTC 2805 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || ||||| ||||| ||||||||||| | ||| | | |||||||||| Sbjct 2804 GAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTG 2745 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| || |||| ||| | | | ||||| || || || |||| || ||||| | Sbjct 2744 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTTATGGTCT 2686 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 | |||||||| || || || ||||| ||||||||| Sbjct 2685 TACCCGTTAGGGTTTTCACGAAGATCTGCATTTTC 2651 >seq26701 Length=70828 Score = 107 bits (118), Expect = 2e-18 Identities = 143/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||||||||| |||||||| || || | || || ||||| || ||||| || Sbjct 32923 TCCTTCTGAATATTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAG 32864 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || || | |||||| || | ||| | | ||||||| | ||| | || | ||||| | Sbjct 32863 ATCAGCCTCTGCTGATCCGGTGGGATCCCTTCCTTGT-CTTGAATCTTGGCTTTGACATT 32805 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| ||| |||||| |||| ||||||||| ||||| || || ||||| Sbjct 32804 GTCAATGGTGTCAGAGCT---TTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGGGTCTT 32748 Query 42194 TACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 32747 AACAAAGATCTGCAT 32733 >seq7849 Length=122270 Score = 102 bits (112), Expect = 9e-17 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||||||| | || |||||| || || ||||| || |||||||||||| | Sbjct 79484 CGCAGCACCAAATGTAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCCAGAGTCCGCCCA 79543 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || | ||||| || ||||| || || | ||| || || | ||| | | ||| || Sbjct 79544 TCCTCCAATTGCTTCCCTGCGAAGATCAGCCTCTGTTGATCCGGTGGAATCCCCTCTTTA 79603 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 ||| ||| | |||| || | | | | ||| || |||| || || |||| ||| Sbjct 79604 TCC-TGAATCTTTGCCTTCACGTTATCAATCGTATCAGAGCTC---TCAACCTCGAGCGT 79659 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||| || ||||| ||||| || || ||||||||||||||| Sbjct 79660 GATTGTCTTGCCGGTTAGGGTTTTGACAAAGATTTGCATT 79699 >seq5804 Length=153150 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||| | |||||| || | || || || || |||||||| || ||| Sbjct 33016 CCACCCCTGAGACGGAGCACCAAGTGGAGGGTCGATTCTTTCTGTATATTGTAGTCGGCC 32957 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || || | ||||| || || || ||||| | ||||||||| | ||| Sbjct 32956 AGGGTGCGCCCATCCTCCAATTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 32897 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTC---GCTCGATTC 42157 | || |||||||||| ||| || |||| ||| | | | ||||| |||| || Sbjct 32896 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGCTC---TC 32841 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| || || || ||||| || || ||||| || ||||||||||| Sbjct 32840 AACCTCGAGGGTAATAGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 32790 >seq2905 Length=56485 Score = 93.3 bits (102), Expect = 5e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | || |||||| || || ||||| || || || || || |||| || Sbjct 52744 CACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTC 52685 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||| || || ||||| || || ||||||||||| | || | || ||||||| | | Sbjct 52684 CAGCTGTTTTCCGGCGAAGATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTGT-CTT 52626 Query 42119 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 || | |||| |||| | | | |||||| ||||| || || | || || || | Sbjct 52625 GAATCTTTGCCTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCTAGGGTAATAGTCT 52566 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 | |||||||| || || || ||||| ||||| ||| Sbjct 52565 TCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTC 52531 >seq22277 Length=3790 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || |||||||| || || || Sbjct 1495 CTCCTTCTGGATGTTGTAGTCTGCTAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAA 1436 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || || |||||||| | ||| | | ||||||||| ||| || |||| | Sbjct 1435 GATCAGCCGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 1376 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| ||| ||| || || | ||||||||||| ||||| || ||||| Sbjct 1375 ATCAATGGTGTCAGAGCT---TTCGACTTCTAGGGTGATGGTTTTTCCCGTGAGGGTCTT 1319 Query 42194 TACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 1318 CACAAAGATCTGCAT 1304 >seq21627 Length=4779 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || |||||||| || || || Sbjct 3287 CTCCTTCTGGATGTTGTAGTCTGCTAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAA 3346 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || || |||||||| | ||| | | ||||||||| ||| || |||| | Sbjct 3347 GATCAGCCGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 3406 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| ||| ||| || || | ||||||||||| ||||| || ||||| Sbjct 3407 ATCAATGGTGTCAGAGCT---TTCGACTTCTAGGGTGATGGTTTTTCCCGTGAGGGTCTT 3463 Query 42194 TACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 3464 CACAAAGATCTGCAT 3478 >seq12303 Length=64598 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| || || || |||| || ||| | || || | |||||| ||||| || Sbjct 10862 TCCTTCTGAATGTTATAGTCGGCCAAGGTACGCCCATCCTCCAACTGCTTCCCAGCAAAG 10921 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 42136 || | | ||||||||| | ||| | | |||||| || ||| | |||| |||| | Sbjct 10922 ATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTATCT-TGAATCTTTGCCTTGACATT 10980 Query 42137 CGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | |||||| ||| ||||| |||| |||||||||||||| || || ||||| Sbjct 10981 ATCGATGGTGTCGGAGCTC---TCCACCTCGAGAGTGATGGTTTTGCCGGTAAGGGTCTT 11037 Query 42194 TACAAAGATTTGCAT 42208 || ||||| ||||| Sbjct 11038 CACGAAGATCTGCAT 11052 >seq892 Length=123481 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || ||||| || || ||||| Sbjct 88292 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCCAGCTGTTTTCCGGCGAA 88351 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || ||| ||||| ||| || |||| | Sbjct 88352 GATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATT 88411 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| ||||| || || | || ||||| || |||||||| || || || Sbjct 88412 GTCGATGGTGTCAGATGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCAC 88471 Query 42197 AAAGATTTGCATTTTC 42212 ||||| ||||| ||| Sbjct 88472 GAAGATCTGCATCTTC 88487 >seq2938 Length=28785 Score = 86.0 bits (94), Expect = 7e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| |||| || |||||| ||||| || ||||||||||| || || | Sbjct 10944 ACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTATAATCAGCCAGGGTGCGTCC 10885 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | |||||| ||||| || || | || ||||||||| | ||| | | |||||| Sbjct 10884 ATCCTCCAACTGCTTCCCAGCAAAAATCAATCTCTGCTGGTCCGGTGGGATTCCCTCCTT 10825 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 ||| ||| || || | | | | ||||| |||| || || || | || Sbjct 10824 GTCTTGGATCTTCGCCTTAACATTGTCAATGGTGTCCGAGCTC---TCAACCTCCAGGGT 10768 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || ||||| || || ||||| ||||| || ||||| Sbjct 10767 AATTGTCTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 10729 >seq11833 Length=9351 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 42019 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| |||||||||||||| || |||||||| |||| || ||||| || || |||||| Sbjct 4328 CCTTTCTGAATATTGTAATCGGCGAGAGTCCGGCCGTCTTCGAGCTGTTTTCCGGCGAAT 4387 Query 42078 ATGAGTCGCTGCTGGTC 42094 || || ||||||||||| Sbjct 4388 ATCAGCCGCTGCTGGTC 4404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543031360134640