Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq2905 84.2 2e-11 seq26701 82.4 5e-11 seq22277 82.4 5e-11 seq21627 82.4 5e-11 >seq2905 Length=56485 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || || || || || || |||||||| ||| ||| | | |||| || Sbjct 52743 ACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCC 52684 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||| || ||| | |||| ||||| ||||| ||||| ||||||||||| | Sbjct 52683 AGCTGTTTTCCGGCGAAGATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTGA 52624 Query 15088 AT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||||| || ||| | || || || ||| ||| || |||| |||||| || || Sbjct 52623 ATCTTTGC-CTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCTAGGGTAATAGTCTT 52565 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || ||||| || || || ||||| || Sbjct 52564 CCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 52532 >seq26701 Length=70828 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 || ||||| || || || ||||||||||| || ||| || | | | || || | || Sbjct 32707 TGTAGGGTCGATTCCTTCTGTATGTTGTAGTCTGCT-AGGGTGCGGCCATCCTCCAGCTG 32649 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||| ||| | |||| | ||| ||||| ||| || ||||||||||| ||| || Sbjct 32648 TTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTTGTCTTGAATCTT 32589 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || ||| |||| || || | ||| ||||| || ||||| Sbjct 32588 GGCCTTGACATTGTCAATGGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCTGT 32529 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||| Sbjct 32528 GAGGGTCTTAACGAAGATCTGCAT 32505 >seq22277 Length=3790 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || ||||| || || || || ||||||||||| ||| | | | || || Sbjct 1969 AACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCATCCTC 1910 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||||| || | |||| | ||| || || ||| || || |||||||| Sbjct 1909 CAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTG 1850 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| || ||| | || || ||||| |||| || || | |||||| ||||| Sbjct 1849 AATTTTTGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACCTCGAGGGTAATCGTTTT 1790 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| ||||| || ||||| Sbjct 1789 CCCGGTGAGGGTTTTGACAAAGATCTGCAT 1760 >seq21627 Length=4779 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || ||||| || || || || ||||||||||| ||| | | | || || Sbjct 2813 AACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCATCCTC 2872 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||||| || | |||| | ||| || || ||| || || |||||||| Sbjct 2873 AAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTG 2932 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| || ||| | || || ||||| |||| || || | |||||| ||||| Sbjct 2933 AATTTTTGCCTTGACATTGTCAATGGTATCAGAGCTTTCGACCTCGAGGGTAATCGTTTT 2992 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| ||||| || ||||| Sbjct 2993 CCCGGTGAGGGTTTTGACAAAGATCTGCAT 3022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357275610939485