Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3997 149 8e-31 seq8535 140 4e-28 seq6526 127 3e-24 >seq3997 Length=108068 Score = 149 bits (164), Expect = 8e-31 Identities = 381/567 (67%), Gaps = 15/567 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| ||||| |||| |||||| ||||| || |||||||| | | ||||| |||||| Sbjct 89496 GTACTCCCCAACCCTCTTCTCAAAGAAATTCGTCTTCCCCTGCAAACTGATCAGCTCCAT 89555 Query 127291 AAAATCAAATGGGTTCTTTG-AGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGAC 127349 | ||||| || |||| || | ||||| || ||||| | | || | Sbjct 89556 CCAGTCAAACGGATTCTGTGCACCGTAAAATTTCCCACATCCCAA-CGCAACCAAAAGCC 89614 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 ||||| || |||| |||||| ||||| ||| ||||||||| | ||| | Sbjct 89615 TATCCGCCACAAACTCGATGTACCGGCACATCAGATCACCGTTCATACCCACCAGGGCGC 89674 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG- 127468 | || || ||||| | | |||| | |||| || ||||| || || | ||||| | Sbjct 89675 ACGGCAGAGCGTCGCACACGAACTCTCTCTCTATATCCACCGCGTCGCTCACGATACCCC 89734 Query 127469 TGAATAGTGTCCACCC-CAGGT-CT-ATTGCGTAAAGTCTTGAAGAGTTC-CACAGCAAA 127524 ||||| | ||| | | ||| | || | | |||| || | | || ||| || || Sbjct 89735 TGAATCGC-TCCTCGCTCAGCTTCTGACTCAGTAA---CTCGTACAGCAAGCAC-GCGAA 89789 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || ||| || |||||||| || ||||| || || |||||||| ||| || ||||| Sbjct 89790 GTCGCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAGAAAGTCAGTCCCGGCAT 89849 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 | || |||||||| | ||| || ||||| || || || ||||||||||||||||| Sbjct 89850 TAACCCGCGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTC 89909 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTT 127704 ||| ||||||||||| | ||||||||||| || || || || | ||| || Sbjct 89910 CACGCACGCGAACGCCACGAGACGCTCGGCGAACGATTCTGA---GCCGTCGATCCATTT 89966 Query 127705 CATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTC 127764 || ||||||| ||||| ||| | | || |||| ||||| ||| || | ||||| Sbjct 89967 CAGGGCCCACTTGGCCTTCTTCACCACGCAAGGGATGGTCTCGATTGCGTGGAAGAGGCG 90026 Query 127765 CTTCTTTTCTGATGGATCTTTGATGTA 127791 | ||| || || | || |||||||| Sbjct 90027 GTGCTTCTCGGAGGAGTCCTTGATGTA 90053 >seq8535 Length=22056 Score = 140 bits (154), Expect = 4e-28 Identities = 185/255 (73%), Gaps = 5/255 (2%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||| || ||||| || || |||||||| ||||| ||||| | || ||||| Sbjct 6617 CCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAGACCCGGCATTAACCCGCGCTTT 6676 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | ||| || ||||| || || || |||||||||||||||||||| |||||||| Sbjct 6677 TTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCCACGCACGCGAAT 6736 Query 127658 GCAAATAGACGCTCGGCAAAGGA-GCGGGACTTTGTATCAAACCACTTCATCGCCCACTG 127716 || | || | ||||| || || | | || || | |||||||| |||||||| Sbjct 6737 GCGATGAGCCTTTCGGCGAACGATTCTGAAC----CGTCGATCCACTTCAACGCCCACTT 6792 Query 127717 TGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 127776 ||||||||| || | || |||||||||| |||||| | ||||| ||||| || | Sbjct 6793 TGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGTGGAAGAGGCGGTTCTTCTCGGC 6852 Query 127777 TGGATCTTTGATGTA 127791 | || |||||||| Sbjct 6853 CGAGTCCTTGATGTA 6867 >seq6526 Length=28452 Score = 127 bits (140), Expect = 3e-24 Identities = 370/563 (66%), Gaps = 14/563 (2%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||| || ||||| || || ||||||||| ||||| ||||| | || ||||| Sbjct 21911 CCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTGAGACCCGGCATTAACCCGCGCTTT 21970 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | ||| || ||||| || || || ||||||||||||||||| | ||||||||| Sbjct 21971 TTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCGAAGCACGCGAAC 22030 Query 127658 GCAAATAGACGCTCGGCAAAGGA-GCGGGACTTTGTATCAAACCACTTCATCGCCCACTG 127716 || | || | ||||| || || | | || || | ||| |||| |||||||| Sbjct 22031 GCGATGAGTCTTTCGGCGAACGATTCTGAAC----CGTCGATCCATTTCAACGCCCACTT 22086 Query 127717 TGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 127776 |||||||| || | || |||| ||||| |||||| | ||||| | ||| || | Sbjct 22087 GGCCTTTTTTTCCACGCAAGGGATGGTCTCGATCGCGTGGAAGAGGCGGTCCTTCTCGGC 22146 Query 127777 TGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCATTTCATT 127836 || || ||||||| || | || || ||||| ||||| ||| Sbjct 22147 CGGGTCCCTGATGTAGGATTCGAGCAGGAGGCTGTACATTTCGGAGTGGA--TGTTCTCG 22204 Query 127837 ATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCAAAA 127894 ||||| || | ||||||| | ||||||||| | |||||||| | ||| Sbjct 22205 ATGGCGATTTGGAAGCCGTAGAAGGCCCGCGCTTCGGCAACTTGTACCTCCTTCATGAAA 22264 Query 127895 TTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATATAC 127954 | || ||||| | || || || ||||| | || || || || |||| | Sbjct 22265 CGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGT 22324 Query 127955 TTTATGAATTTCTGTTCATTCTCGTTCAGGGTC---TTCCAGTCGTCGAGATCCTTTGAG 128011 || ||||| | || || | || | |||| | | ||||| | | |||| || Sbjct 22325 TTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCGTCCCAGTGGCGTTGGTCCTGCGAC 22384 Query 128012 AGATCTACCTCCTCCGCAGTCCA-ATTGCTCATTTGAGCCTTCTTATAGAGTTCCCAGAG 128070 ||||| ||||||||||| ||||| | || | || ||||||||| || | ||||||| Sbjct 22385 AGATCCACCTCCTCCGCCGTCCAGAATG-ACGCTTCAGCCTTCTTGTACATCTCCCAGAT 22443 Query 128071 GTGGGGATACTTCAGGGGGAACA 128093 || || |||| | ||||||| Sbjct 22444 CTGCGGGTACTGGATCGGGAACA 22466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613302280926360