Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq3997 149 8e-31
seq8535 140 4e-28
seq6526 127 3e-24
>seq3997
Length=108068
Score = 149 bits (164), Expect = 8e-31
Identities = 381/567 (67%), Gaps = 15/567 (3%)
Strand=Plus/Plus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
||| ||||| |||| |||||| ||||| || |||||||| | | ||||| ||||||
Sbjct 89496 GTACTCCCCAACCCTCTTCTCAAAGAAATTCGTCTTCCCCTGCAAACTGATCAGCTCCAT 89555
Query 127291 AAAATCAAATGGGTTCTTTG-AGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGAC 127349
| ||||| || |||| || | ||||| || ||||| | | || |
Sbjct 89556 CCAGTCAAACGGATTCTGTGCACCGTAAAATTTCCCACATCCCAA-CGCAACCAAAAGCC 89614
Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409
||||| || |||| |||||| ||||| ||| ||||||||| | ||| |
Sbjct 89615 TATCCGCCACAAACTCGATGTACCGGCACATCAGATCACCGTTCATACCCACCAGGGCGC 89674
Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG- 127468
| || || ||||| | | |||| | |||| || ||||| || || | ||||| |
Sbjct 89675 ACGGCAGAGCGTCGCACACGAACTCTCTCTCTATATCCACCGCGTCGCTCACGATACCCC 89734
Query 127469 TGAATAGTGTCCACCC-CAGGT-CT-ATTGCGTAAAGTCTTGAAGAGTTC-CACAGCAAA 127524
||||| | ||| | | ||| | || | | |||| || | | || ||| || ||
Sbjct 89735 TGAATCGC-TCCTCGCTCAGCTTCTGACTCAGTAA---CTCGTACAGCAAGCAC-GCGAA 89789
Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584
|| ||| || |||||||| || ||||| || || |||||||| ||| || |||||
Sbjct 89790 GTCGCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAGAAAGTCAGTCCCGGCAT 89849
Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644
| || |||||||| | ||| || ||||| || || || |||||||||||||||||
Sbjct 89850 TAACCCGCGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTC 89909
Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTT 127704
||| ||||||||||| | ||||||||||| || || || || | ||| ||
Sbjct 89910 CACGCACGCGAACGCCACGAGACGCTCGGCGAACGATTCTGA---GCCGTCGATCCATTT 89966
Query 127705 CATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTC 127764
|| ||||||| ||||| ||| | | || |||| ||||| ||| || | |||||
Sbjct 89967 CAGGGCCCACTTGGCCTTCTTCACCACGCAAGGGATGGTCTCGATTGCGTGGAAGAGGCG 90026
Query 127765 CTTCTTTTCTGATGGATCTTTGATGTA 127791
| ||| || || | || ||||||||
Sbjct 90027 GTGCTTCTCGGAGGAGTCCTTGATGTA 90053
>seq8535
Length=22056
Score = 140 bits (154), Expect = 4e-28
Identities = 185/255 (73%), Gaps = 5/255 (2%)
Strand=Plus/Plus
Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597
|||||||| || ||||| || || |||||||| ||||| ||||| | || |||||
Sbjct 6617 CCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAGACCCGGCATTAACCCGCGCTTT 6676
Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657
|| | ||| || ||||| || || || |||||||||||||||||||| ||||||||
Sbjct 6677 TTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCCACGCACGCGAAT 6736
Query 127658 GCAAATAGACGCTCGGCAAAGGA-GCGGGACTTTGTATCAAACCACTTCATCGCCCACTG 127716
|| | || | ||||| || || | | || || | |||||||| ||||||||
Sbjct 6737 GCGATGAGCCTTTCGGCGAACGATTCTGAAC----CGTCGATCCACTTCAACGCCCACTT 6792
Query 127717 TGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 127776
||||||||| || | || |||||||||| |||||| | ||||| ||||| || |
Sbjct 6793 TGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGTGGAAGAGGCGGTTCTTCTCGGC 6852
Query 127777 TGGATCTTTGATGTA 127791
| || ||||||||
Sbjct 6853 CGAGTCCTTGATGTA 6867
>seq6526
Length=28452
Score = 127 bits (140), Expect = 3e-24
Identities = 370/563 (66%), Gaps = 14/563 (2%)
Strand=Plus/Plus
Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597
|||||||| || ||||| || || ||||||||| ||||| ||||| | || |||||
Sbjct 21911 CCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTGAGACCCGGCATTAACCCGCGCTTT 21970
Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657
|| | ||| || ||||| || || || ||||||||||||||||| | |||||||||
Sbjct 21971 TTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCGAAGCACGCGAAC 22030
Query 127658 GCAAATAGACGCTCGGCAAAGGA-GCGGGACTTTGTATCAAACCACTTCATCGCCCACTG 127716
|| | || | ||||| || || | | || || | ||| |||| ||||||||
Sbjct 22031 GCGATGAGTCTTTCGGCGAACGATTCTGAAC----CGTCGATCCATTTCAACGCCCACTT 22086
Query 127717 TGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 127776
|||||||| || | || |||| ||||| |||||| | ||||| | ||| || |
Sbjct 22087 GGCCTTTTTTTCCACGCAAGGGATGGTCTCGATCGCGTGGAAGAGGCGGTCCTTCTCGGC 22146
Query 127777 TGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCATTTCATT 127836
|| || ||||||| || | || || ||||| ||||| |||
Sbjct 22147 CGGGTCCCTGATGTAGGATTCGAGCAGGAGGCTGTACATTTCGGAGTGGA--TGTTCTCG 22204
Query 127837 ATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCAAAA 127894
||||| || | ||||||| | ||||||||| | |||||||| | |||
Sbjct 22205 ATGGCGATTTGGAAGCCGTAGAAGGCCCGCGCTTCGGCAACTTGTACCTCCTTCATGAAA 22264
Query 127895 TTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATATAC 127954
| || ||||| | || || || ||||| | || || || || |||| |
Sbjct 22265 CGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGT 22324
Query 127955 TTTATGAATTTCTGTTCATTCTCGTTCAGGGTC---TTCCAGTCGTCGAGATCCTTTGAG 128011
|| ||||| | || || | || | |||| | | ||||| | | |||| ||
Sbjct 22325 TTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCGTCCCAGTGGCGTTGGTCCTGCGAC 22384
Query 128012 AGATCTACCTCCTCCGCAGTCCA-ATTGCTCATTTGAGCCTTCTTATAGAGTTCCCAGAG 128070
||||| ||||||||||| ||||| | || | || ||||||||| || | |||||||
Sbjct 22385 AGATCCACCTCCTCCGCCGTCCAGAATG-ACGCTTCAGCCTTCTTGTACATCTCCCAGAT 22443
Query 128071 GTGGGGATACTTCAGGGGGAACA 128093
|| || |||| | |||||||
Sbjct 22444 CTGCGGGTACTGGATCGGGAACA 22466
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613302280926360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |