Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3997 159 6e-34 seq8535 145 1e-29 seq6526 141 1e-28 >seq3997 Length=108068 Score = 159 bits (176), Expect = 6e-34 Identities = 483/736 (66%), Gaps = 20/736 (3%) Strand=Plus/Plus Query 159751 CCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-C 159809 ||| || |||||||| |||||||| | |||||| | |||| ||| || |||| ||| | Sbjct 89613 CCTATCCGCCACAAACTCGATGTACCGGCACATCAGATCACCGTTCATACCCACCAGGGC 89672 Query 159810 TAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT 159869 |||| || || || ||| ||||| |||| || || ||||| ||| |||| || Sbjct 89673 GCACGGC-AGAGCGTCGCACACGAACTCTCTCTCTATATCCACCGCGTCGCTCACGATAC 89731 Query 159870 GCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAA 159929 | || || || | | | |||| | | | | || |||| | |||||| | Sbjct 89732 CCCTGAATCGCTCCTCGCTCAGCTT---CTGACTCAGTAACTCGTACAGCAAGCACGCGA 89788 Query 159930 AGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCA 159989 |||||||||| || |||||||| || ||||| | |||||| || | | || ||||||| Sbjct 89789 AGTCGCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAGAAAGTCAGTCCCGGCA 89848 Query 159990 TGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCC 160048 | | ||| ||| ||||||||||| || | |||| |||| ||| || ||||||||| Sbjct 89849 TTAACCCGCGCTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGAAGATCCCC 89907 Query 160049 TCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCAC 160108 |||||| ||| ||||||||||| | ||| | || || | | | | | | |||| Sbjct 89908 TCCACGCACGCGAACGCCACGAGACGCTCGGCGAACGA---TTCTGAGCCGTCGATCCAT 89964 Query 160109 CTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAAT 160168 | |||||| | |||||||| | | ||| || ||| ||||| |||| || | Sbjct 89965 TTCAGGGCCCACTTGGCCTTCTTCACCACGCAAGGGATGGTCTCGATTGCGTGGAAGAGG 90024 Query 160169 CTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATC----AGCTTCGAGTACATTTC 160224 | || || ||| |||||||| |||| | || || |||||| || Sbjct 90025 CGGTGCTTCTCGGAGGAGTCCTTGAT----GTAGGATTCGAGGAGGAGGCTGTACATCTC 90080 Query 160225 TGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATA-CT 160283 | ||| | || ||||| || ||||| ||| |||||| |||| ||| | || Sbjct 90081 GGAGTGGATGTTCTCGATCGCGATCTGGAAGCCATAGAAAGCGCGGGCCT-CAGCGACCT 90139 Query 160284 GCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAA 160343 | ||||||| |||| | | ||||| | || | ||||||| ||| || | Sbjct 90140 GGACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCTGCGA 90199 Query 160344 AGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT 160403 |||| || | ||||| |||||||| || |||||||| | | || | | ||||||| Sbjct 90200 AGAAGGCGAGGACGTGGGAGATGAAGTGCCTCTCGTCGGCGGTTAGGGTTTGGTCCCAGT 90259 Query 160404 GTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTT 160463 | | ||| || | || ||||| ||||| |||| | |||| || | | Sbjct 90260 GGCGAAGGTCAGCGGAGAGGTCCACCTCCTCCGCCGTCCAGAACGACGCCTCTGCCTTCT 90319 Query 160464 TGTACATGGCCCAGAT 160479 ||||||| ||||||| Sbjct 90320 TGTACATCTCCCAGAT 90335 >seq8535 Length=22056 Score = 145 bits (160), Expect = 1e-29 Identities = 548/847 (65%), Gaps = 36/847 (4%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGAT----TCCATGAACCCGAAT 159703 ||||||| ||||| |||||||| |||| | | | |||| ||||| | |||| Sbjct 6324 TCTTCTCAAAAAAATTGGTCTTCCCCT----GTAAACTGATCAGCTCCATCCAATCGAAC 6379 Query 159704 GGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACA 159763 ||||| || || ||| | | ||||| || ||| | ||| || || || Sbjct 6380 GGGTTGGGAACACCGTACATCTTACCACACCCGAGCGCACCCAAAAGCCTATCCGCGACG 6439 Query 159764 AATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGC 159822 ||||||||||| | |||| | |||| ||| || |||| ||| | ||||| ||||| Sbjct 6440 AATTCGATGTACTGGCTCATCAGATCACCGTTCATTCCCACCAGGGCGCACGGG-AGCGC 6498 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTC 159882 || ||| ||||| |||| ||| ||||| |||| || ||| | ||| || || Sbjct 6499 GTCGCACACGAACTCTCTCTCTATCGTCACCGCGTCGGCAACGATCCCCCTGACTCGGTC 6558 Query 159883 GTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942 | | ||| ||| || || | | || |||||||| || |||||||||| Sbjct 6559 CTCGCTCGGTTTGTGAGTCATCAACTCGT---AGAGAAGGCACGCGAAATCGCAGTGCAA 6615 Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002 |||||||| || ||||| | |||||| || | |||| |||||||| | ||| ||| Sbjct 6616 GCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAGACCCGGCATTAACCCGCGCTT 6675 Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAA 160061 |||||||||||| || | |||| |||| ||| || ||||||||||||||| ||| | Sbjct 6676 TTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGAAGATCCCCTCCACGCACGCGA 6734 Query 160062 ACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATT 160121 | || | |||||| || | || || | | | | | ||||| | ||||| | Sbjct 6735 ATGCGATGAGCCTTTCGGCGAACGA---TTCTGAACCGTCGATCCACTTCAACGCCCACT 6791 Query 160122 CAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181 ||||| ||| | | ||| || | | ||||| |||| || | | || || ||| Sbjct 6792 TTGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGTGGAAGAGGCGGTTCTTCTCGG 6851 Query 160182 TCACATCCTTGATCAGAGTAGCAATC-AGCTTCGA----GTACATTTCTGCGTGCACATT 160236 | |||||||| |||| | || ||| || ||||||||| | ||| | || Sbjct 6852 CCGAGTCCTTGAT----GTAGGATTCGAGC-AGGAGGCTGTACATTTCGGAGTGGATGTT 6906 Query 160237 TTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGC---CTCCAGATAC-TGCACCTCCT 160292 |||||||| || || ||| |||||| | ||| || | | || || ||||||| Sbjct 6907 CTCGATGGCGATTTGGAAGCCGTAGAA----GGCGCGCGCTTCGGCGACTTGTACCTCCT 6962 Query 160293 GTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCA 160352 |||| | | | || || | || | || || | ||| || ||||| || | Sbjct 6963 TCATGAATCGGCCAGCGAGGTTCTCGAGGACGATGCCATCTGAGGCGGCGAAGAAGGCGA 7022 Query 160353 ACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGT 160412 ||||| | |||||| || ||||||| | |||| || |||||||| || Sbjct 7023 GGACGTGGGTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCATCCCAGTGGCGTTGGT 7082 Query 160413 CTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGG 160472 | || | || ||| || || ||||| |||| | || | || | |||||||| Sbjct 7083 CCTGCGACAGATCCACTTCCTCCGCCGTCCAGAACGACGCTTCGGCCTTCTTGTACATCT 7142 Query 160473 CCCAGAT 160479 ||||||| Sbjct 7143 CCCAGAT 7149 >seq6526 Length=28452 Score = 141 bits (156), Expect = 1e-28 Identities = 481/737 (65%), Gaps = 22/737 (3%) Strand=Plus/Plus Query 159751 CCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-C 159809 ||| || || | || |||||||| || |||| | |||| ||| ||||||| || | Sbjct 21721 CCTATCAGCGATGAACTCGATGTACTGACTCATCAGATCACCGTTCATCCCCACTAGAGC 21780 Query 159810 TAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT 159869 ||||| ||||| || ||| ||||| |||| ||||| ||||| |||| || || Sbjct 21781 GCACGGG-AGCGCGTCGCACACGAACTCTCTCTCTATCTCCACCGCGTCGGCAACGATTC 21839 Query 159870 GCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAA 159929 | ||| ||||| | | | | ||| || || | | || | |||||| | Sbjct 21840 CCCTGACTCGTTCCTCACTCAGTTTGTGAGTCATCAACTCGT---AGAGCAAGCACGCGA 21896 Query 159930 AGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCA 159989 | |||||||||| |||||||| || ||||| | |||||| || | | |||| ||||||| Sbjct 21897 AATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTGAGACCCGGCA 21956 Query 159990 TGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCC 160048 | | ||| ||| |||||||||||| || | |||| |||| ||| || ||||||||| Sbjct 21957 TTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGAAGATCCCC 22015 Query 160049 TCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCAC 160108 || | | ||| ||||| | ||| || || | || || | | | | | |||| Sbjct 22016 TCGAAGCACGCGAACGCGATGAGTCTTTCGGCGAACGA---TTCTGAACCGTCGATCCAT 22072 Query 160109 CTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAAT 160168 | ||||| | ||||| ||| | | ||| || ||| ||||| |||| || | Sbjct 22073 TTCAACGCCCACTTGGCCTTTTTTTCCACGCAAGGGATGGTCTCGATCGCGTGGAAGAGG 22132 Query 160169 CTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATC-AGCTTCGA----GTACATTT 160223 | ||||| ||| | ||| |||| |||| | || ||| || |||||||| Sbjct 22133 CGGTCCTTCTCGGCCGGGTCCCTGAT----GTAGGATTCGAGC-AGGAGGCTGTACATTT 22187 Query 160224 CTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACT 160283 | | ||| | || |||||||| || || ||| |||||| ||| || | | Sbjct 22188 CGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCCCGCGCTTCGGCAACTT 22247 Query 160284 GCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAA 160343 | ||||||| |||| | | || || | || | ||||||| ||| || | Sbjct 22248 GTACCTCCTTCATGAAACGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGA 22307 Query 160344 AGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT 160403 |||| || | ||||| |||||| || ||||||| | |||| || ||||||| Sbjct 22308 AGAAGGCGAGGACGTGTTTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCGTCCCAGT 22367 Query 160404 GTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA-ATTGGCAGCCTGAGCAGTT 160462 | ||| || | || ||| ||||| ||||| |||| | || | || | ||| | Sbjct 22368 GGCGTTGGTCCTGCGACAGATCCACCTCCTCCGCCGTCCAGAATGAC-GCTTCAGCCTTC 22426 Query 160463 TTGTACATGGCCCAGAT 160479 |||||||| ||||||| Sbjct 22427 TTGTACATCTCCCAGAT 22443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794889608223760