Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq3997 159 6e-34
seq8535 145 1e-29
seq6526 141 1e-28
>seq3997
Length=108068
Score = 159 bits (176), Expect = 6e-34
Identities = 483/736 (66%), Gaps = 20/736 (3%)
Strand=Plus/Plus
Query 159751 CCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-C 159809
||| || |||||||| |||||||| | |||||| | |||| ||| || |||| ||| |
Sbjct 89613 CCTATCCGCCACAAACTCGATGTACCGGCACATCAGATCACCGTTCATACCCACCAGGGC 89672
Query 159810 TAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT 159869
|||| || || || ||| ||||| |||| || || ||||| ||| |||| ||
Sbjct 89673 GCACGGC-AGAGCGTCGCACACGAACTCTCTCTCTATATCCACCGCGTCGCTCACGATAC 89731
Query 159870 GCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAA 159929
| || || || | | | |||| | | | | || |||| | |||||| |
Sbjct 89732 CCCTGAATCGCTCCTCGCTCAGCTT---CTGACTCAGTAACTCGTACAGCAAGCACGCGA 89788
Query 159930 AGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCA 159989
|||||||||| || |||||||| || ||||| | |||||| || | | || |||||||
Sbjct 89789 AGTCGCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAGAAAGTCAGTCCCGGCA 89848
Query 159990 TGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCC 160048
| | ||| ||| ||||||||||| || | |||| |||| ||| || |||||||||
Sbjct 89849 TTAACCCGCGCTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGAAGATCCCC 89907
Query 160049 TCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCAC 160108
|||||| ||| ||||||||||| | ||| | || || | | | | | | ||||
Sbjct 89908 TCCACGCACGCGAACGCCACGAGACGCTCGGCGAACGA---TTCTGAGCCGTCGATCCAT 89964
Query 160109 CTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAAT 160168
| |||||| | |||||||| | | ||| || ||| ||||| |||| || |
Sbjct 89965 TTCAGGGCCCACTTGGCCTTCTTCACCACGCAAGGGATGGTCTCGATTGCGTGGAAGAGG 90024
Query 160169 CTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATC----AGCTTCGAGTACATTTC 160224
| || || ||| |||||||| |||| | || || |||||| ||
Sbjct 90025 CGGTGCTTCTCGGAGGAGTCCTTGAT----GTAGGATTCGAGGAGGAGGCTGTACATCTC 90080
Query 160225 TGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATA-CT 160283
| ||| | || ||||| || ||||| ||| |||||| |||| ||| | ||
Sbjct 90081 GGAGTGGATGTTCTCGATCGCGATCTGGAAGCCATAGAAAGCGCGGGCCT-CAGCGACCT 90139
Query 160284 GCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAA 160343
| ||||||| |||| | | ||||| | || | ||||||| ||| || |
Sbjct 90140 GGACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCTGCGA 90199
Query 160344 AGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT 160403
|||| || | ||||| |||||||| || |||||||| | | || | | |||||||
Sbjct 90200 AGAAGGCGAGGACGTGGGAGATGAAGTGCCTCTCGTCGGCGGTTAGGGTTTGGTCCCAGT 90259
Query 160404 GTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTT 160463
| | ||| || | || ||||| ||||| |||| | |||| || | |
Sbjct 90260 GGCGAAGGTCAGCGGAGAGGTCCACCTCCTCCGCCGTCCAGAACGACGCCTCTGCCTTCT 90319
Query 160464 TGTACATGGCCCAGAT 160479
||||||| |||||||
Sbjct 90320 TGTACATCTCCCAGAT 90335
>seq8535
Length=22056
Score = 145 bits (160), Expect = 1e-29
Identities = 548/847 (65%), Gaps = 36/847 (4%)
Strand=Plus/Plus
Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGAT----TCCATGAACCCGAAT 159703
||||||| ||||| |||||||| |||| | | | |||| ||||| | ||||
Sbjct 6324 TCTTCTCAAAAAAATTGGTCTTCCCCT----GTAAACTGATCAGCTCCATCCAATCGAAC 6379
Query 159704 GGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACA 159763
||||| || || ||| | | ||||| || ||| | ||| || || ||
Sbjct 6380 GGGTTGGGAACACCGTACATCTTACCACACCCGAGCGCACCCAAAAGCCTATCCGCGACG 6439
Query 159764 AATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGC 159822
||||||||||| | |||| | |||| ||| || |||| ||| | ||||| |||||
Sbjct 6440 AATTCGATGTACTGGCTCATCAGATCACCGTTCATTCCCACCAGGGCGCACGGG-AGCGC 6498
Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTC 159882
|| ||| ||||| |||| ||| ||||| |||| || ||| | ||| || ||
Sbjct 6499 GTCGCACACGAACTCTCTCTCTATCGTCACCGCGTCGGCAACGATCCCCCTGACTCGGTC 6558
Query 159883 GTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942
| | ||| ||| || || | | || |||||||| || ||||||||||
Sbjct 6559 CTCGCTCGGTTTGTGAGTCATCAACTCGT---AGAGAAGGCACGCGAAATCGCAGTGCAA 6615
Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002
|||||||| || ||||| | |||||| || | |||| |||||||| | ||| |||
Sbjct 6616 GCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAGACCCGGCATTAACCCGCGCTT 6675
Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAA 160061
|||||||||||| || | |||| |||| ||| || ||||||||||||||| ||| |
Sbjct 6676 TTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGAAGATCCCCTCCACGCACGCGA 6734
Query 160062 ACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATT 160121
| || | |||||| || | || || | | | | | ||||| | ||||| |
Sbjct 6735 ATGCGATGAGCCTTTCGGCGAACGA---TTCTGAACCGTCGATCCACTTCAACGCCCACT 6791
Query 160122 CAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181
||||| ||| | | ||| || | | ||||| |||| || | | || || |||
Sbjct 6792 TTGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGTGGAAGAGGCGGTTCTTCTCGG 6851
Query 160182 TCACATCCTTGATCAGAGTAGCAATC-AGCTTCGA----GTACATTTCTGCGTGCACATT 160236
| |||||||| |||| | || ||| || ||||||||| | ||| | ||
Sbjct 6852 CCGAGTCCTTGAT----GTAGGATTCGAGC-AGGAGGCTGTACATTTCGGAGTGGATGTT 6906
Query 160237 TTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGC---CTCCAGATAC-TGCACCTCCT 160292
|||||||| || || ||| |||||| | ||| || | | || || |||||||
Sbjct 6907 CTCGATGGCGATTTGGAAGCCGTAGAA----GGCGCGCGCTTCGGCGACTTGTACCTCCT 6962
Query 160293 GTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCA 160352
|||| | | | || || | || | || || | ||| || ||||| || |
Sbjct 6963 TCATGAATCGGCCAGCGAGGTTCTCGAGGACGATGCCATCTGAGGCGGCGAAGAAGGCGA 7022
Query 160353 ACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGT 160412
||||| | |||||| || ||||||| | |||| || |||||||| ||
Sbjct 7023 GGACGTGGGTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCATCCCAGTGGCGTTGGT 7082
Query 160413 CTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGG 160472
| || | || ||| || || ||||| |||| | || | || | ||||||||
Sbjct 7083 CCTGCGACAGATCCACTTCCTCCGCCGTCCAGAACGACGCTTCGGCCTTCTTGTACATCT 7142
Query 160473 CCCAGAT 160479
|||||||
Sbjct 7143 CCCAGAT 7149
>seq6526
Length=28452
Score = 141 bits (156), Expect = 1e-28
Identities = 481/737 (65%), Gaps = 22/737 (3%)
Strand=Plus/Plus
Query 159751 CCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-C 159809
||| || || | || |||||||| || |||| | |||| ||| ||||||| || |
Sbjct 21721 CCTATCAGCGATGAACTCGATGTACTGACTCATCAGATCACCGTTCATCCCCACTAGAGC 21780
Query 159810 TAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT 159869
||||| ||||| || ||| ||||| |||| ||||| ||||| |||| || ||
Sbjct 21781 GCACGGG-AGCGCGTCGCACACGAACTCTCTCTCTATCTCCACCGCGTCGGCAACGATTC 21839
Query 159870 GCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAA 159929
| ||| ||||| | | | | ||| || || | | || | |||||| |
Sbjct 21840 CCCTGACTCGTTCCTCACTCAGTTTGTGAGTCATCAACTCGT---AGAGCAAGCACGCGA 21896
Query 159930 AGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCA 159989
| |||||||||| |||||||| || ||||| | |||||| || | | |||| |||||||
Sbjct 21897 AATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTGAGACCCGGCA 21956
Query 159990 TGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCC 160048
| | ||| ||| |||||||||||| || | |||| |||| ||| || |||||||||
Sbjct 21957 TTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGAAGATCCCC 22015
Query 160049 TCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCAC 160108
|| | | ||| ||||| | ||| || || | || || | | | | | ||||
Sbjct 22016 TCGAAGCACGCGAACGCGATGAGTCTTTCGGCGAACGA---TTCTGAACCGTCGATCCAT 22072
Query 160109 CTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAAT 160168
| ||||| | ||||| ||| | | ||| || ||| ||||| |||| || |
Sbjct 22073 TTCAACGCCCACTTGGCCTTTTTTTCCACGCAAGGGATGGTCTCGATCGCGTGGAAGAGG 22132
Query 160169 CTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATC-AGCTTCGA----GTACATTT 160223
| ||||| ||| | ||| |||| |||| | || ||| || ||||||||
Sbjct 22133 CGGTCCTTCTCGGCCGGGTCCCTGAT----GTAGGATTCGAGC-AGGAGGCTGTACATTT 22187
Query 160224 CTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACT 160283
| | ||| | || |||||||| || || ||| |||||| ||| || | |
Sbjct 22188 CGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCCCGCGCTTCGGCAACTT 22247
Query 160284 GCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAA 160343
| ||||||| |||| | | || || | || | ||||||| ||| || |
Sbjct 22248 GTACCTCCTTCATGAAACGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGA 22307
Query 160344 AGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT 160403
|||| || | ||||| |||||| || ||||||| | |||| || |||||||
Sbjct 22308 AGAAGGCGAGGACGTGTTTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCGTCCCAGT 22367
Query 160404 GTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA-ATTGGCAGCCTGAGCAGTT 160462
| ||| || | || ||| ||||| ||||| |||| | || | || | ||| |
Sbjct 22368 GGCGTTGGTCCTGCGACAGATCCACCTCCTCCGCCGTCCAGAATGAC-GCTTCAGCCTTC 22426
Query 160463 TTGTACATGGCCCAGAT 160479
|||||||| |||||||
Sbjct 22427 TTGTACATCTCCCAGAT 22443
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 794889608223760
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