Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq15031 161 1e-34 seq15694 136 5e-27 seq3997 131 2e-25 seq8535 129 7e-25 seq6526 118 1e-21 seq838 86.0 8e-12 seq3070 82.4 9e-11 >seq15031 Length=67428 Score = 161 bits (178), Expect = 1e-34 Identities = 295/423 (70%), Gaps = 12/423 (3%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCA 15974 |||||| |||||| | || || ||||| || || |||| | ||| |||||| || || Sbjct 39397 ATCAAGAATATCAGCACGGTTAGTTGCTGCAATAACAATGACACCAGTGTTTCCTT--CA 39454 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 ||||||||||| ||||||||||||||||||| || ||||| | ||||||||| || | Sbjct 39455 AAACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT--C 39512 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | | | |||| | | |||| | || || |||||||| ||||||| ||||| |||| Sbjct 39513 CTCCGATTCCAGTTCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAAGACAATGC 39572 Query 16093 ATGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 | ||| ||| | | | | ||| ||| ||||| || || || ||| || |||||| Sbjct 39573 AGGGTGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGGACCCGAGAGGCACCAACACCA 39631 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 ||||||||||| || || | || | ||| || | || || || ||| | |||||| Sbjct 39632 ACAAACATCTCTACGAACTCTGAACCAGAA-ATGGAGAAAAATGGAACACCTGCTTCACC 39690 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 ||||| || ||| || || ||||| || || ||||| ||| | || || | || Sbjct 39691 AGCAATCGCCTTGGCCAGCAGGGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAACTCC 39750 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 16330 | || || || ||| | || | | ||||| || | ||| ||||| ||||| | Sbjct 39751 TTTAGGGATACGAGCCCCAACTGCAGTGAACCTCTCGGGCTTCTTCAGAAACTCCACCAC 39810 Query 16331 CTC 16333 ||| Sbjct 39811 CTC 39813 >seq15694 Length=177509 Score = 136 bits (150), Expect = 5e-27 Identities = 239/339 (71%), Gaps = 12/339 (4%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCA 15974 |||||| ||||| | || || ||||| || || |||| ||||| |||||| || || Sbjct 55444 ATCAAGAATATCTGCACGGTTAGTTGCCGCAATTACAATGATACCAGTGTTTCCTT--CA 55501 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 ||||||||||| ||||||||||||||||||| || ||||| | |||||||| || | Sbjct 55502 AAACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTCTCATCATTTCCT--C 55559 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | | | |||| | | ||| | || || |||||||| ||||||| ||||| |||| Sbjct 55560 CTCCAATTCCAGTTCCTCTCTGCCTCCCAACAGCATCAATTTCATCAACAAAGACAATGC 55619 Query 16093 ATGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 | ||| ||| | | | | ||| ||| ||||| || || || ||| || |||||| Sbjct 55620 AGGGTGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACCCGAGAGGCACCAACACCA 55678 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 || |||||||| || || | || | ||| || | || || || ||| | ||| || Sbjct 55679 ACGAACATCTCTACGAACTCTGAACCAGAA-ATGGAGAAAAATGGAACACCTGCTTCGCC 55737 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||||| || || || | |||||| || || ||||| Sbjct 55738 AGCAATTGCCTTCGCCAGCAAAGTCTTCCCAGTTCCTGG 55776 >seq3997 Length=108068 Score = 131 bits (144), Expect = 2e-25 Identities = 305/452 (67%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || || ||||| ||| | || || ||||| || ||||| ||||||||||| || | Sbjct 89945 TCGTTCGCCGAGCGTCTCGTGGCGTTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGAAGC 89886 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | ||||||||||||||| || | ||||| || || ||||| ||| Sbjct 89885 TTCTGCGCGATATTTTGGCTCAAGAAGCGCGGGTTAATGCCGGGACTGACTTTCTCGAAC 89826 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTA 102350 ||||| ||||| || |||||||| || ||| || || ||| || | | | ||| Sbjct 89825 GAGCTAATCTCGCGAGACGAGGGCCTTCACTGCGACTTCGCGTGCTTGCTGTACGAGTTA 89766 Query 102351 TTGCGTATTAAAC-CAACGACTGAGACTATTCA-TTCTATTGTTAAGGAAGCCGTTGAGA 102408 || || || | | ||| ||| | ||||| ||| || | || || || || | Sbjct 89765 CTGAGTCAGAAGCTGAGCGA-GGAG-CGATTCAGGGGTATCGTGAGCGACGCGGTGGATA 89708 Query 102409 TTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAA 102468 | |||| | ||| | | || || || || ||||| || | |||||||| ||| Sbjct 89707 TAGAGAGAGAGTTCGTGTGCGACGCTCTGCCGTGCGCCCTGGTGGGTATGAACGGTGATC 89648 Query 102469 AGATGTCCGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTC 102528 ||||| | || || |||| ||| | ||||| | ||| | | ||| || Sbjct 89647 TGATGTGCCGGTACATCGAGTTTGTGGCGGATAGGCTTTTGGTTGCG-TTGGGATGTGGG 89589 Query 102529 CAATTTGGAACTCCA-AGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAG 102587 ||||| | || ||||||| ||||||| |||||| || || | | |||||| Sbjct 89588 AAATTTTACGGTGCACAGAATCCGTTTGACTGGATGGAGCTGATCAGTTTGCAGGGGAAG 89529 Query 102588 ACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 102619 || || ||||| || |||||||||||||| || Sbjct 89528 ACGAATTTCTTTGAGAAGAGGGTTGGGGAGTA 89497 >seq8535 Length=22056 Score = 129 bits (142), Expect = 7e-25 Identities = 174/242 (72%), Gaps = 9/242 (4%) Strand=Plus/Minus Query 102075 GCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCG 102134 || |||||||| | ||||| | || ||| | || || || || | |||| || || Sbjct 6852 GCCGAGAAGAACCGCCTCTTCCACGCGATCGAGACCGTCCCTTGCGTGGAAAAAAAGGCA 6793 Query 102135 GATTGGGCTATGAAGTGGTTTGA---TACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTC 102191 | ||||| |||||||| | || | || | ||| || || || | ||| || Sbjct 6792 AAGTGGGCGTTGAAGTGGATCGACGGTTCAGAATCG------TTCGCCGAAAGGCTCATC 6739 Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 102251 ||||| ||||| || ||||| ||||||||||| || ||||||||| || | ||||||| Sbjct 6738 GCATTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGAAGCTTCTGCGCGATATTTTGGCTC 6679 Query 102252 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 102311 || ||||| || | ||||| |||||| ||||| |||||||| ||||| || |||||| Sbjct 6678 AAAAAGCGCGGGTTAATGCCGGGTCTCACTTTCTCGAACGAGCTGATCTCGCGAGACGAG 6619 Query 102312 GG 102313 || Sbjct 6618 GG 6617 >seq6526 Length=28452 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || || || ||||| |||| || ||||| | ||||| ||||||||||| || | Sbjct 22053 TCGTTCGCCGAAAGACTCATCGCGTTCGCGTGCTTCGAGGGGATCTTCTTCTCCGGAAGC 21994 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | ||||||||| ||||| || | ||||| |||||| |||||| ||| Sbjct 21993 TTCTGCGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGTCTCACCTTCTCGAAC 21934 Query 102291 GAGCTTATCTCTCGTGACGAGGG 102313 ||||| ||||| || |||||||| Sbjct 21933 GAGCTGATCTCGCGAGACGAGGG 21911 >seq838 Length=146170 Score = 86.0 bits (94), Expect = 8e-12 Identities = 191/281 (68%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||||||||| ||||| |||||||| || || | ||||||||| | Sbjct 102974 AAACCCATCCATCTCTGTCAACAGCTGATTAATAGTCTGCTCTCTCTCATCATTCCC--A 103031 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | | | || || | | ||| | || || |||||||||||||| || || || ||| Sbjct 103032 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCAACCGCATCAATCTCATCTATAAACACAATG 103091 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 || || | |||| | || || ||||| | |||| || | | || ||||||| Sbjct 103092 CAAGG-CGCTTTT-GACTTCGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCCCCCACAC 103149 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 | ||||||| || ||||| | || || | |||| | ||| || || | ||| | Sbjct 103150 CCACAAACAATTCTACAAATTCTGATGCAGCACATGAAAAGAATGGCACGCCGGCTTCTC 103209 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 16250 | || | || | || | || ||||| || ||||| ||| Sbjct 103210 CGGCCACCGCCCTTGCCAACAGGGTCTTCCCGGTACCAGGC 103250 >seq3070 Length=18027 Score = 82.4 bits (90), Expect = 9e-11 Identities = 189/281 (67%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||||||||| ||||| |||||||| || || | ||||||||| | Sbjct 8574 AAACCCATCCATCTCTGTCAACAGCTGATTAATAGTCTGCTCTCTCTCATCATTCCC--A 8631 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | | | || || | | ||| | ||||| || ||||||||||| || || || ||| Sbjct 8632 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCCACCGCGTCAATCTCATCTATAAACACAATG 8691 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 || || ||||| | || ||||| | |||| || | | || ||||||| Sbjct 8692 CAAGG--CGCTTTCGACTTGGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCCCCCACAC 8749 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 | ||||||| || ||||| | || || | |||| | ||| || || | ||| | Sbjct 8750 CCACAAACAATTCTACAAATTCTGATGCAGCACATGAAAAGAACGGCACGCCGGCTTCTC 8809 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 16250 | || | || | || | || ||||| || ||||| ||| Sbjct 8810 CAGCCACCGCCCTCGCCAACAGGGTCTTTCCGGTACCGGGC 8850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620535064279120