Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq15694 109 6e-19 seq18474 84.2 3e-11 seq18472 84.2 3e-11 >seq15694 Length=177509 Score = 109 bits (120), Expect = 6e-19 Identities = 285/430 (66%), Gaps = 6/430 (1%) Strand=Plus/Plus Query 11526 TAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTC 11585 || |||| |||||||||||| ||||||| || || ||||| || | || ||||| | Sbjct 55435 TAAAGCAGAATCAAGAATATCTGCACGGTTAGTTGCCGCAATTACAATGATACCAGTGTT 55494 Query 11586 ATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTT 11645 || ||||| ||||||||||| | ||||||||| | |||||||| | |||||| || Sbjct 55495 TCCTTCAAAACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTCTCATCATT 55554 Query 11646 GGAGGGCATACCA--CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAAT 11703 | | | | || | | || | | || ||||| ||||| ||||| | || Sbjct 55555 --TCCTCCTCCAATTCCAGTTCCTCTCTGCCTCCCAACAGCATCAATTTCATCAACAAAG 55612 Query 11704 ACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCA 11763 || || || ||| || | |||| | |||||| ||||| || || || ||| Sbjct 55613 ACAATGCAGGGTGCATTCTCCTTGGCCTTCTTGAAAAGATCACGAACCCGAGAGGCACCA 55672 Query 11764 ACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGA 11822 ||||| ||||||||||| ||||| | || ||||| | || | || |||||| | Sbjct 55673 ACACCAACGAACATCTCTACGAACTCTGAACCAGAA-ATGGAGAAAAATGGAACACCTGC 55731 Query 11823 CTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882 || ||||| || || || || | |||||| || || || || | || | ||||| Sbjct 55732 TTCGCCAGCAATTGCCTTCGCCAGCAAAGTCTTCCCAGTTCCTGGAGGTCCTACAAGAAG 55791 Query 11883 GGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTC 11942 | || ||||| || ||| | || | | | ||| |||||||| || || || Sbjct 55792 AACTCCCTTAGGGATACGAGCCCCAACTGCAGTGAACCTCTCGGGCTTCTTCAGAAACTC 55851 Query 11943 CACAATCTCC 11952 ||| | |||| Sbjct 55852 CACCACCTCC 55861 >seq18474 Length=70118 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 31328 CGAGATTGGGGTCATGCGAAGGACTACGTGGAGGCCATGTGGCTCATGCTTCAACAAGAA 31387 ||||||||||| ||| ||||||||||||||| |||||||||||| | || || ||| Sbjct 11959 CGAGATTGGGGATTCGCGGGGGACTACGTGGAGGCAATGTGGCTCATGATGCAGCAGGAA 11900 Query 31388 CGTCCAGATGATTATGTCGTCGCAAC 31413 ||| ||||||||||| || ||||| Sbjct 11899 ACTCCCGATGATTATGTGGTGGCAAC 11874 >seq18472 Length=136984 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 31328 CGAGATTGGGGTCATGCGAAGGACTACGTGGAGGCCATGTGGCTCATGCTTCAACAAGAA 31387 ||||||||||| ||| ||||||||||||||| |||||||||||| | || || ||| Sbjct 113025 CGAGATTGGGGATTCGCGGGGGACTACGTGGAGGCAATGTGGCTCATGATGCAGCAGGAA 113084 Query 31388 CGTCCAGATGATTATGTCGTCGCAAC 31413 ||| ||||||||||| || ||||| Sbjct 113085 ACTCCCGATGATTATGTGGTGGCAAC 113110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588779274653800